RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 LMAN2Q12907 356 aa20.15■□□□□ 0.82
SHKBP1-221ENST00000599833 MTA1Q13330 715 aa20.15■□□□□ 0.82
SHKBP1-221ENST00000599833 SLC18A3Q16572 532 aa20.15■□□□□ 0.82
SHKBP1-221ENST00000599833 FUT11Q495W5 492 aa20.15■□□□□ 0.82
SHKBP1-221ENST00000599833 PREPLQ4J6C6 727 aaPredicted RBP20.15■□□□□ 0.82
SHKBP1-221ENST00000599833 ALKBH5Q6P6C2 394 aaKnown RBP20.15■□□□□ 0.82
SHKBP1-221ENST00000599833 ANKS1BQ7Z6G8 1248 aa20.15■□□□□ 0.82
SHKBP1-221ENST00000599833 TXNDC5Q8NBS9 432 aaKnown RBP20.15■□□□□ 0.82
SHKBP1-221ENST00000599833 ZBTB44Q8NCP5 570 aa20.15■□□□□ 0.82
SHKBP1-221ENST00000599833 RNF34Q969K3 372 aa20.15■□□□□ 0.82
SHKBP1-221ENST00000599833 ZNF653Q96CK0 615 aa20.15■□□□□ 0.82
SHKBP1-221ENST00000599833 HAPLN3Q96S86 360 aa20.15■□□□□ 0.82
SHKBP1-221ENST00000599833 CNPY3Q9BT09 278 aa20.15■□□□□ 0.82
SHKBP1-221ENST00000599833 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.15■□□□□ 0.82
SHKBP1-221ENST00000599833 ABCB8Q9NUT2 735 aa20.15■□□□□ 0.82
SHKBP1-221ENST00000599833 FAM86C1Q9NVL1 165 aa20.15■□□□□ 0.82
SHKBP1-221ENST00000599833 STIM2Q9P246 746 aa20.15■□□□□ 0.82
SHKBP1-221ENST00000599833 SLC12A6Q9UHW9 1150 aa20.15■□□□□ 0.82
SHKBP1-221ENST00000599833 VANGL2Q9ULK5 521 aa20.15■□□□□ 0.82
SHKBP1-221ENST00000599833 LAMA1P25391 3075 aa20.15■□□□□ 0.82
SHKBP1-221ENST00000599833 LILRB5O75023 590 aa20.14■□□□□ 0.81
SHKBP1-221ENST00000599833 CNTN5O94779 1100 aa20.14■□□□□ 0.81
SHKBP1-221ENST00000599833 CYP1A2P05177 515 aa20.14■□□□□ 0.81
SHKBP1-221ENST00000599833 MYBL1P10243 752 aa20.14■□□□□ 0.81
SHKBP1-221ENST00000599833 FECHP22830 423 aa20.14■□□□□ 0.81
SHKBP1-221ENST00000599833 NRG1Q02297 640 aaPredicted RBP20.14■□□□□ 0.81
SHKBP1-221ENST00000599833 SCAPQ12770 1279 aa20.14■□□□□ 0.81
SHKBP1-221ENST00000599833 DMC1Q14565 340 aa20.14■□□□□ 0.81
SHKBP1-221ENST00000599833 HSF5Q4G112 596 aaPredicted RBP20.14■□□□□ 0.81
SHKBP1-221ENST00000599833 ALFQ53S48 1182 aa20.14■□□□□ 0.81
SHKBP1-221ENST00000599833 CNGA4Q8IV77 575 aa20.14■□□□□ 0.81
SHKBP1-221ENST00000599833 CCAR2Q8N163 923 aaKnown RBP20.14■□□□□ 0.81
SHKBP1-221ENST00000599833 CCDC33Q8N5R6 958 aa20.14■□□□□ 0.81
SHKBP1-221ENST00000599833 ZNF513Q8N8E2 541 aaPredicted RBP20.14■□□□□ 0.81
SHKBP1-221ENST00000599833 FNIP1Q8TF40 1166 aa20.14■□□□□ 0.81
SHKBP1-221ENST00000599833 SORCS1Q8WY21 1168 aa20.14■□□□□ 0.81
SHKBP1-221ENST00000599833 NTAN1Q96AB6 310 aa20.14■□□□□ 0.81
SHKBP1-221ENST00000599833 ALG14Q96F25 216 aa20.14■□□□□ 0.81
SHKBP1-221ENST00000599833 PACSIN1Q9BY11 444 aa20.14■□□□□ 0.81
SHKBP1-221ENST00000599833 GGA2Q9UJY4 613 aa20.14■□□□□ 0.81
SHKBP1-221ENST00000599833 GPR179Q6PRD1 2367 aa20.13■□□□□ 0.81
SHKBP1-221ENST00000599833 A0A1W2PQF6 199 aa20.13■□□□□ 0.81
SHKBP1-221ENST00000599833 FAM72CH0Y354 149 aa20.13■□□□□ 0.81
SHKBP1-221ENST00000599833 ATG13O75143 517 aa20.13■□□□□ 0.81
SHKBP1-221ENST00000599833 KLF8O95600 359 aaPredicted RBP20.13■□□□□ 0.81
SHKBP1-221ENST00000599833 PABPC1P11940 636 aaKnown RBP20.13■□□□□ 0.81
SHKBP1-221ENST00000599833 GALCP54803 685 aa20.13■□□□□ 0.81
SHKBP1-221ENST00000599833 PTPRNQ16849 979 aa20.13■□□□□ 0.81
SHKBP1-221ENST00000599833 CCDC122Q5T0U0 273 aa20.13■□□□□ 0.81
SHKBP1-221ENST00000599833 FAM72AQ5TYM5 149 aa20.13■□□□□ 0.81
SHKBP1-221ENST00000599833 FAM72DQ6L9T8 149 aa20.13■□□□□ 0.81
SHKBP1-221ENST00000599833 FAM72BQ86X60 149 aa20.13■□□□□ 0.81
SHKBP1-221ENST00000599833 MFN1Q8IWA4 741 aa20.13■□□□□ 0.81
SHKBP1-221ENST00000599833 ACDQ96AP0 544 aa20.13■□□□□ 0.81
SHKBP1-221ENST00000599833 MYO19Q96H55 970 aa20.13■□□□□ 0.81
SHKBP1-221ENST00000599833 PEBP4Q96S96 227 aa20.13■□□□□ 0.81
SHKBP1-221ENST00000599833 GABRG3Q99928 467 aa20.13■□□□□ 0.81
SHKBP1-221ENST00000599833 SIK2Q9H0K1 926 aa20.13■□□□□ 0.81
SHKBP1-221ENST00000599833 NHEJ1Q9H9Q4 299 aaPredicted RBP20.13■□□□□ 0.81
SHKBP1-221ENST00000599833 ELOVL2Q9NXB9 296 aa20.13■□□□□ 0.81
SHKBP1-221ENST00000599833 THAP10Q9P2Z0 257 aaPredicted RBP20.13■□□□□ 0.81
SHKBP1-221ENST00000599833 OR51B4Q9Y5P0 310 aa20.13■□□□□ 0.81
SHKBP1-221ENST00000599833 PLXND1Q9Y4D7 1925 aa20.12■□□□□ 0.81
SHKBP1-221ENST00000599833 A0A1B0GVM2 712 aa20.12■□□□□ 0.81
SHKBP1-221ENST00000599833 TCAF2A6NFQ2 919 aa20.12■□□□□ 0.81
SHKBP1-221ENST00000599833 NBL1P41271 181 aa20.12■□□□□ 0.81
SHKBP1-221ENST00000599833 EIF4HQ15056 248 aaKnown RBP20.12■□□□□ 0.81
SHKBP1-221ENST00000599833 CRY1Q16526 586 aa20.12■□□□□ 0.81
SHKBP1-221ENST00000599833 TTC39BQ5VTQ0 682 aaPredicted RBP20.12■□□□□ 0.81
SHKBP1-221ENST00000599833 DCUN1D2Q6PH85 259 aa20.12■□□□□ 0.81
SHKBP1-221ENST00000599833 SND1Q7KZF4 910 aaKnown RBP eCLIP20.12■□□□□ 0.81
SHKBP1-221ENST00000599833 VPS36Q86VN1 386 aa20.12■□□□□ 0.81
SHKBP1-221ENST00000599833 RASSF3Q86WH2 238 aa20.12■□□□□ 0.81
SHKBP1-221ENST00000599833 CARNMT1Q8N4J0 409 aa20.12■□□□□ 0.81
SHKBP1-221ENST00000599833 CCDC26Q8TAB7 109 aa20.12■□□□□ 0.81
SHKBP1-221ENST00000599833 WFIKKN2Q8TEU8 576 aa20.12■□□□□ 0.81
SHKBP1-221ENST00000599833 TTC17Q96AE7 1141 aa20.12■□□□□ 0.81
SHKBP1-221ENST00000599833 TRIM11Q96F44 468 aa20.12■□□□□ 0.81
SHKBP1-221ENST00000599833 RPRD1AQ96P16 312 aaPredicted RBP20.12■□□□□ 0.81
SHKBP1-221ENST00000599833 HHIPQ96QV1 700 aa20.12■□□□□ 0.81
SHKBP1-221ENST00000599833 OSBPL2Q9H1P3 480 aa20.12■□□□□ 0.81
SHKBP1-221ENST00000599833 PAXBP1Q9Y5B6 917 aa20.12■□□□□ 0.81
SHKBP1-221ENST00000599833 WASH3PC4AMC7 463 aa20.11■□□□□ 0.81
SHKBP1-221ENST00000599833 E9PAM4 449 aa20.11■□□□□ 0.81
SHKBP1-221ENST00000599833 IL12RB1P42701 662 aa20.11■□□□□ 0.81
SHKBP1-221ENST00000599833 PLK1P53350 603 aa20.11■□□□□ 0.81
SHKBP1-221ENST00000599833 SEMA3BQ13214 749 aa20.11■□□□□ 0.81
SHKBP1-221ENST00000599833 RABGAP1LQ5R372 815 aa20.11■□□□□ 0.81
SHKBP1-221ENST00000599833 CHST9Q7L1S5 443 aa20.11■□□□□ 0.81
SHKBP1-221ENST00000599833 AHI1Q8N157 1196 aa20.11■□□□□ 0.81
SHKBP1-221ENST00000599833 MRGPRX3Q96LB0 322 aa20.11■□□□□ 0.81
SHKBP1-221ENST00000599833 SPTLC3Q9NUV7 552 aa20.11■□□□□ 0.81
SHKBP1-221ENST00000599833 ZSCAN32Q9NX65 697 aa20.11■□□□□ 0.81
SHKBP1-221ENST00000599833 MYO1AQ9UBC5 1043 aa20.11■□□□□ 0.81
SHKBP1-221ENST00000599833 TBC1D30Q9Y2I9 924 aa20.11■□□□□ 0.81
SHKBP1-221ENST00000599833 SCINQ9Y6U3 715 aa20.11■□□□□ 0.81
SHKBP1-221ENST00000599833 ZNF292O60281 2723 aa20.11■□□□□ 0.81
SHKBP1-221ENST00000599833 NYNRINQ9P2P1 1898 aaKnown RBP20.11■□□□□ 0.81
SHKBP1-221ENST00000599833 ZFHX2Q9C0A1 2572 aaPredicted RBP20.1■□□□□ 0.81
SHKBP1-221ENST00000599833 CFAP54Q96N23 3096 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms