RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	FAM71D	Q8N9W8	422 aa		15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	BBOF1	Q8ND07	529 aa		15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	CASP10	Q92851	521 aa		15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	PWWP2A	Q96N64	755 aa		15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	RAB3IP	Q96QF0	476 aa	Predicted RBP	15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	FBXO44	Q9H4M3	255 aa		15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	WDCP	Q9H6R7	721 aa		15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	DTL	Q9NZJ0	730 aa		15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	L3MBTL1	Q9Y468	752 aa		15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	BAIAP3	O94812	1187 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	SOD2	P04179	222 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	ZFX	P17010	805 aa	Predicted RBP	15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	PMS2	P54278	862 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	GALNTL6	Q49A17	601 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	RNASEH2B	Q5TBB1	312 aa	Known RBP	15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	DARS2	Q6PI48	645 aa	Known RBP	15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	C2orf15	Q8WU43	125 aa	Known RBP	15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	RSAD2	Q8WXG1	361 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	RTP4	Q96DX8	246 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	NAF1	Q96HR8	494 aa	Known RBP	15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	SPATA17	Q96L03	361 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	ZNF558	Q96NG5	402 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	CLSTN3	Q9BQT9	956 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	OSBPL1A	Q9BXW6	950 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	YIPF3	Q9GZM5	350 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	TKTL2	Q9H0I9	626 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	IL23A	Q9NPF7	189 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	ARHGEF3	Q9NR81	526 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	SH3BP1	Q9Y3L3	701 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	LRRC42	Q9Y546	428 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	BCLAF3	A2AJT9	711 aa	Known RBP	15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318		H3BRJ5	948 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318		H7C0C1	242 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	PDLIM1	O00151	329 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	CREB3	O43889	395 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	RARG	P13631	454 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	STIP1	P31948	543 aa	Known RBP	15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	ATP5O	P48047	213 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	NR2C2	P49116	596 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	NCALD	P61601	193 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	BTG3	Q14201	252 aa	Predicted RBP	15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	MGAT5B	Q3V5L5	792 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	DENND5B	Q6ZUT9	1274 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	RFX8	Q6ZV50	586 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	OTOP2	Q7RTS6	562 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	COLGALT1	Q8NBJ5	622 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	LRRN4	Q8WUT4	740 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	ATXN2L	Q8WWM7	1075 aa	Known RBP	15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	OLFM3	Q96PB7	478 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	SEPT5	Q99719	369 aa	Predicted RBP	15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	PABPC3	Q9H361	631 aa	Known RBP	15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	SEMA4A	Q9H3S1	761 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	PRDM16	Q9HAZ2	1276 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	ARHGEF38	Q9NXL2	777 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	GMIP	Q9P107	970 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	SFMBT1	Q9UHJ3	866 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	NUDT5	Q9UKK9	219 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	FARP1	Q9Y4F1	1045 aa	Predicted RBP	15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	SNX10	Q9Y5X0	201 aa		15.86	■□□□□ 0.13
DDX39A-209	ENST00000589318	DCLK1	O15075	740 aa		15.85	■□□□□ 0.13
DDX39A-209	ENST00000589318	MFSD11	O43934	449 aa		15.85	■□□□□ 0.13
DDX39A-209	ENST00000589318	ATF6	P18850	670 aa		15.85	■□□□□ 0.13
DDX39A-209	ENST00000589318	EN2	P19622	333 aa	Predicted RBP	15.85	■□□□□ 0.13
DDX39A-209	ENST00000589318	OR1D2	P34982	312 aa		15.85	■□□□□ 0.13
DDX39A-209	ENST00000589318	TAF11	Q15544	211 aa		15.85	■□□□□ 0.13
DDX39A-209	ENST00000589318	FAM182A	Q5T1J6	154 aa		15.85	■□□□□ 0.13
DDX39A-209	ENST00000589318	SPOUT1	Q5T280	376 aa	Known RBP	15.85	■□□□□ 0.13
DDX39A-209	ENST00000589318	ARTN	Q5T4W7	220 aa		15.85	■□□□□ 0.13
DDX39A-209	ENST00000589318	MSANTD2	Q6P1R3	559 aa		15.85	■□□□□ 0.13
DDX39A-209	ENST00000589318	OR2W6P	Q8NHA6	318 aa		15.85	■□□□□ 0.13
DDX39A-209	ENST00000589318	EEF2K	O00418	725 aa	Known RBP	15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	MSI1	O43347	362 aa	Known RBP	15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	SUN1	O94901	812 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	AGT	P01019	485 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	YWHAQ	P27348	245 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	RBL1	P28749	1068 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	HCAR3	P49019	387 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	DSG1	Q02413	1049 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	BNIP1	Q12981	228 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	DYNC1I2	Q13409	638 aa	Known RBP	15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	ARL13B	Q3SXY8	428 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	ZCCHC9	Q8N567	271 aa	Known RBP	15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	HERC2P3	Q9BVR0	1158 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	ECT2	Q9H8V3	914 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	NEU3	Q9UQ49	428 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	C2CD2L	O14523	706 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	SMIM24	O75264	130 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	LINC00271	P0C7V0	271 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	CHN1	P15882	459 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	LAG3	P18627	525 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	MSH2	P43246	934 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	MORF4L2	Q15014	288 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	PAFAH1B3	Q15102	231 aa	Known RBP	15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	C6orf118	Q5T5N4	469 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	THEMIS2	Q5TEJ8	643 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	CCDC25	Q86WR0	208 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	CCDC33	Q8N5R6	958 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	FBF1	Q8TES7	1133 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	CPT1B	Q92523	772 aa		15.84	■□□□□ 0.13
DDX39A-209	ENST00000589318	PRCC	Q92733	491 aa	Predicted RBP	15.84	■□□□□ 0.13

Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms