RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 CCDC121Q6ZUS5 278 aa13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 TAOK1Q7L7X3 1001 aa13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 CACNA2D3Q8IZS8 1091 aa13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 PLD5Q8N7P1 536 aa13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 RNF139Q8WU17 664 aa13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 TEKT4Q8WW24 435 aa13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 ARHGEF2Q92974 986 aaKnown RBP13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 ZNF317Q96PQ6 595 aaPredicted RBP13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 CSPG4P5Q96PW8 444 aa13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 FBXO44Q9H4M3 255 aa13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 KIAA1522Q9P206 1035 aaPredicted RBP13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 MCM8Q9UJA3 840 aa13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 FBXW11Q9UKB1 542 aa13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 TPX2Q9ULW0 747 aaKnown RBP13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 SRRM3A6NNA2 597 aaPredicted RBP13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 TGM5O43548 720 aa13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 BANF1O75531 89 aa13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 SRGAP2BP0DMP2 458 aa13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 PPM1AP35813 382 aa13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 GDF10P55107 478 aa13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 SLC10A2Q12908 348 aaPredicted RBP13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 ZKSCAN8Q15776 578 aaPredicted RBP13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 PREPLQ4J6C6 727 aaPredicted RBP13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 BBS12Q6ZW61 710 aa13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 POF1BQ8WVV4 589 aa13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 SLC9A7Q96T83 725 aa13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 ROPN1BQ9BZX4 212 aaPredicted RBP13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 ROPN1Q9HAT0 212 aaPredicted RBP13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 KCNK9Q9NPC2 374 aa13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 IL37Q9NZH6 218 aa13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 YIPF1Q9Y548 306 aa13.08□□□□□ -0.32
CDK5RAP3-217ENST00000580287 ITGAVP06756 1048 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 CTSAP10619 480 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 HMGA1P17096 107 aaKnown RBP13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 PTPN7P35236 360 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 NUMBP49757 651 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 RPL10AP62906 217 aaKnown RBP13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 RAB33AQ14088 237 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 GKAP1Q5VSY0 366 aaPredicted RBP13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 DRICH1Q6PGQ1 229 aaPredicted RBP13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 MAP7D3Q8IWC1 876 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 ZBED8Q8IZ13 594 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 ZCCHC9Q8N567 271 aaKnown RBP13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 DYDC1Q8WWB3 177 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 ZNF512Q96ME7 567 aaPredicted RBP13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 VPS37BQ9H9H4 285 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 ENTPD7Q9NQZ7 604 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 SUFUQ9UMX1 484 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 DRG1Q9Y295 367 aaKnown RBP13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 SPTBN5Q9NRC6 3674 aaKnown RBP13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 SCAMP3O14828 347 aaKnown RBP13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 GRM6O15303 877 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 IRAK2O43187 625 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 TUFMP49411 452 aaKnown RBP13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 CXCR3P49682 368 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 EIF3EP60228 445 aaKnown RBP13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 PLD1Q13393 1074 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 FASTKD3Q14CZ7 662 aaKnown RBP13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 PDK2Q15119 407 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 C10orf120Q5SQS8 335 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 FAM71DQ8N9W8 422 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 TTC16Q8NEE8 873 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 GIMAP7Q8NHV1 300 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 SP7Q8TDD2 431 aaPredicted RBP13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 NKD2Q969F2 451 aaPredicted RBP13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 SPATA17Q96L03 361 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 CCDC77Q9BR77 488 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 TMEM109Q9BVC6 243 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 HAUS2Q9NVX0 235 aa13.07□□□□□ -0.32
CDK5RAP3-217ENST00000580287 PRUNE2Q8WUY3 3088 aa13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 TNRC18O15417 2968 aaPredicted RBP13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 TMEM120BA0PK00 339 aa13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 MCF2LO15068 1137 aa13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 IGLV3-25P01717 112 aa13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 ELF1P32519 619 aa13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 ALDH1A3P47895 512 aa13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 SMARCB1Q12824 385 aa13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 EIF4EBP2Q13542 120 aaPredicted RBP13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 CAMK1Q14012 370 aa13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 EFHC2Q5JST6 749 aa13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 SYCP2LQ5T4T6 812 aa13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 ANKMY2Q8IV38 441 aa13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 UNC45BQ8IWX7 931 aa13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 SCML4Q8N228 414 aa13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 TTC13Q8NBP0 860 aa13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 SLC35B2Q8TB61 432 aa13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 SPPL3Q8TCT6 385 aa13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 THOC1Q96FV9 657 aaKnown RBP13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 SERPINB12Q96P63 405 aa13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 TACO1Q9BSH4 297 aaKnown RBP13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 PCDH9Q9HC56 1237 aa13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.06□□□□□ -0.321e-6■□□□□ 8
CDK5RAP3-217ENST00000580287 OR12D3Q9UGF7 316 aa13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 FAM92AA1XBS5 289 aa13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 POC1B-GALNT4F8VUJ3 575 aa13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 NRG2O14511 850 aaPredicted RBP13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 PER2O15055 1255 aa13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 RBP3P10745 1247 aa13.06□□□□□ -0.32
CDK5RAP3-217ENST00000580287 GAD2Q05329 585 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms