RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 EPHB2P29323 1055 aa21.27■■□□□ 1
CLN3-212ENST00000564574 VCPP55072 806 aaKnown RBP21.27■■□□□ 1
CLN3-212ENST00000564574 GAD2Q05329 585 aa21.27■■□□□ 1
CLN3-212ENST00000564574 NR1H3Q13133 447 aa21.27■■□□□ 1
CLN3-212ENST00000564574 DHCR24Q15392 516 aa21.27■■□□□ 1
CLN3-212ENST00000564574 PPP2R5EQ16537 467 aa21.27■■□□□ 1
CLN3-212ENST00000564574 TAZQ16635 292 aa21.27■■□□□ 1
CLN3-212ENST00000564574 RFX8Q6ZV50 586 aa21.27■■□□□ 1
CLN3-212ENST00000564574 CHST9Q7L1S5 443 aa21.27■■□□□ 1
CLN3-212ENST00000564574 SLC44A3Q8N4M1 653 aa21.27■■□□□ 1
CLN3-212ENST00000564574 IGSF8Q969P0 613 aa21.27■■□□□ 1
CLN3-212ENST00000564574 RNF25Q96BH1 459 aaPredicted RBP21.27■■□□□ 1
CLN3-212ENST00000564574 FAF2Q96CS3 445 aa21.27■■□□□ 1
CLN3-212ENST00000564574 ZFYVE19Q96K21 471 aa21.27■■□□□ 1
CLN3-212ENST00000564574 C16orf45Q96MC5 204 aaPredicted RBP21.27■■□□□ 1
CLN3-212ENST00000564574 BRD9Q9H8M2 597 aa21.27■■□□□ 1
CLN3-212ENST00000564574 TRPV5Q9NQA5 729 aa21.27■■□□□ 1
CLN3-212ENST00000564574 DONSONQ9NYP3 566 aa21.27■■□□□ 1
CLN3-212ENST00000564574 NEU3Q9UQ49 428 aa21.27■■□□□ 1
CLN3-212ENST00000564574 TICRRQ7Z2Z1 1910 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 A0A1B0GVM2 712 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 TCAF2A6NFQ2 919 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 WASH4PA8MWX3 477 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 PI4K2BG5E9Z4 385 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 ENC1O14682 589 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 TRDMT1O14717 391 aaKnown RBP21.26■□□□□ 0.99
CLN3-212ENST00000564574 DAPK3O43293 454 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 PENKP01210 267 aaPredicted RBP21.26■□□□□ 0.99
CLN3-212ENST00000564574 ATP1A1P05023 1023 aaKnown RBP21.26■□□□□ 0.99
CLN3-212ENST00000564574 CYP17A1P05093 508 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 CD48P09326 243 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 BMP1P13497 986 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 RHOQP17081 205 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 PTPN7P35236 360 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 DNA2P51530 1060 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 CDH4P55283 916 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 RUNX3Q13761 415 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 LY6G5CQ5SRR4 150 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 ARTNQ5T4W7 220 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 SEL1L2Q5TEA6 688 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 FYB2Q5VWT5 728 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 RNF43Q68DV7 783 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 TRIM68Q6AZZ1 485 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 RWDD4Q6NW29 188 aaKnown RBP21.26■□□□□ 0.99
CLN3-212ENST00000564574 RHBDF2Q6PJF5 856 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 MFSD7Q6UXD7 560 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 SPOCD1Q6ZMY3 1216 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 TPGS1Q6ZTW0 290 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 CCDC50Q8IVM0 306 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 ZNF557Q8N988 423 aaPredicted RBP21.26■□□□□ 0.99
CLN3-212ENST00000564574 DDI1Q8WTU0 396 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 CSPG4P5Q96PW8 444 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 EBF3Q9H4W6 596 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 ECT2Q9H8V3 914 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 HPS4Q9NQG7 708 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 DNAI1Q9UI46 699 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 EFR3BQ9Y2G0 817 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 COL4A2P08572 1712 aa21.26■□□□□ 0.99
CLN3-212ENST00000564574 TCF20Q9UGU0 1960 aaKnown RBP21.25■□□□□ 0.99
CLN3-212ENST00000564574 ARNTLO00327 626 aa21.25■□□□□ 0.99
CLN3-212ENST00000564574 KCNK3O14649 394 aa21.25■□□□□ 0.99
CLN3-212ENST00000564574 HOXC11O43248 304 aaPredicted RBP21.25■□□□□ 0.99
CLN3-212ENST00000564574 TBL1XO60907 577 aa21.25■□□□□ 0.99
CLN3-212ENST00000564574 CLDN11O75508 207 aa21.25■□□□□ 0.99
CLN3-212ENST00000564574 ADH5P11766 374 aa21.25■□□□□ 0.99
CLN3-212ENST00000564574 ARSAP15289 507 aa21.25■□□□□ 0.99
CLN3-212ENST00000564574 IL4RP24394 825 aa21.25■□□□□ 0.99
CLN3-212ENST00000564574 CASQ1P31415 396 aa21.25■□□□□ 0.99
CLN3-212ENST00000564574 CDKN2BP42772 138 aa21.25■□□□□ 0.99
CLN3-212ENST00000564574 TDGQ13569 410 aa21.25■□□□□ 0.99
CLN3-212ENST00000564574 DPYSQ14117 519 aa21.25■□□□□ 0.99
CLN3-212ENST00000564574 ANKRD20A8PQ5CZ79 823 aa21.25■□□□□ 0.99
CLN3-212ENST00000564574 TFDP3Q5H9I0 405 aa21.25■□□□□ 0.99
CLN3-212ENST00000564574 PAPD7Q5XG87 772 aaKnown RBP21.25■□□□□ 0.99
CLN3-212ENST00000564574 TMEM25Q86YD3 366 aa21.25■□□□□ 0.99
CLN3-212ENST00000564574 CCDC117Q8IWD4 279 aaPredicted RBP21.25■□□□□ 0.99
CLN3-212ENST00000564574 DNASE1L2Q92874 299 aa21.25■□□□□ 0.99
CLN3-212ENST00000564574 MYEOVQ96EZ4 313 aa21.25■□□□□ 0.99
CLN3-212ENST00000564574 PBKQ96KB5 322 aa21.25■□□□□ 0.99
CLN3-212ENST00000564574 RNF157Q96PX1 679 aa21.25■□□□□ 0.99
CLN3-212ENST00000564574 BBS2Q9BXC9 721 aa21.25■□□□□ 0.99
CLN3-212ENST00000564574 MAK16Q9BXY0 300 aaKnown RBP21.25■□□□□ 0.99
CLN3-212ENST00000564574 TMEM248Q9NWD8 314 aa21.25■□□□□ 0.99
CLN3-212ENST00000564574 ESPNB1AK53 854 aa21.24■□□□□ 0.99
CLN3-212ENST00000564574 CES2O00748 559 aa21.24■□□□□ 0.99
CLN3-212ENST00000564574 PYGMP11217 842 aa21.24■□□□□ 0.99
CLN3-212ENST00000564574 PRLRP16471 622 aa21.24■□□□□ 0.99
CLN3-212ENST00000564574 TCP1P17987 556 aaKnown RBP21.24■□□□□ 0.99
CLN3-212ENST00000564574 MAPKAPK2P49137 400 aa21.24■□□□□ 0.99
CLN3-212ENST00000564574 SGSHP51688 502 aa21.24■□□□□ 0.99
CLN3-212ENST00000564574 RPS24P62847 133 aaKnown RBP21.24■□□□□ 0.99
CLN3-212ENST00000564574 ANO4Q32M45 955 aa21.24■□□□□ 0.99
CLN3-212ENST00000564574 ITPRIPL2Q3MIP1 535 aa21.24■□□□□ 0.99
CLN3-212ENST00000564574 DCAF12L1Q5VU92 463 aa21.24■□□□□ 0.99
CLN3-212ENST00000564574 SYT10Q6XYQ8 523 aa21.24■□□□□ 0.99
CLN3-212ENST00000564574 NLRP14Q86W24 1093 aa21.24■□□□□ 0.99
CLN3-212ENST00000564574 CFAP52Q8N1V2 620 aa21.24■□□□□ 0.99
CLN3-212ENST00000564574 CSGALNACT1Q8TDX6 532 aa21.24■□□□□ 0.99
CLN3-212ENST00000564574 ARHGEF4Q9NR80 690 aa21.24■□□□□ 0.99
CLN3-212ENST00000564574 SNX12Q9UMY4 172 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms