RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 LRRC40Q9H9A6 602 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 CAB39LQ9H9S4 337 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 CCDC167Q9P0B6 97 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 AP4S1Q9Y587 144 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 C1orf232A0A0U1RR37 186 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 SUPT3HB4E1H0 165 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 PHGDHO43175 533 aaKnown RBP7.27□□□□□ -1.25
USP3-210ENST00000559192 TBC1D4O60343 1298 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 TRIM13O60858 407 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 SIN3BO75182 1162 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 MPOP05164 745 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 ABL2P42684 1182 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 GPX6P59796 221 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 YWHAZP63104 245 aaKnown RBP7.27□□□□□ -1.25
USP3-210ENST00000559192 CCNA1P78396 465 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 LAMTOR4Q0VGL1 99 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 SLC15A2Q16348 729 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 ANGEL2Q5VTE6 544 aaKnown RBP7.27□□□□□ -1.25
USP3-210ENST00000559192 EGFL6Q8IUX8 553 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 ZC3H3Q8IXZ2 948 aaKnown RBP7.27□□□□□ -1.25
USP3-210ENST00000559192 TTLL6Q8N841 843 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 SEPT1Q8WYJ6 367 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 CPNE1Q99829 537 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 TEX13BQ9BXU2 312 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 AAASQ9NRG9 546 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.27□□□□□ -1.25
USP3-210ENST00000559192 DAPK2Q9UIK4 370 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 ASTN2O75129 1339 aaPredicted RBP7.27□□□□□ -1.25
USP3-210ENST00000559192 RNF103O00237 685 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 MAGEB2O15479 319 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 SUPT7LO94864 414 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 PIGNO95427 931 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 OAS1P00973 400 aaKnown RBP7.27□□□□□ -1.25
USP3-210ENST00000559192 ALBP02768 609 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 ATP5BP06576 529 aaKnown RBP7.27□□□□□ -1.25
USP3-210ENST00000559192 C4BPBP20851 252 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 HMOX2P30519 316 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 GP5P40197 560 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 GABRB2P47870 512 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 STILQ15468 1287 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 IER5Q5VY09 327 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 BBS12Q6ZW61 710 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 SH3BP5LQ7L8J4 393 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 KCNMB4Q86W47 210 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 RNF139Q8WU17 664 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 PDCD6IPQ8WUM4 868 aaKnown RBP7.27□□□□□ -1.25
USP3-210ENST00000559192 LENG9Q96B70 501 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 MTERF3Q96E29 417 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 PRR11Q96HE9 360 aaPredicted RBP7.27□□□□□ -1.25
USP3-210ENST00000559192 ZBTB18Q99592 522 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 RSL24D1Q9UHA3 163 aaKnown RBP7.27□□□□□ -1.25
USP3-210ENST00000559192 DMTF1Q9Y222 760 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 IGKV6D-41A0A0C4DH26 115 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 UBDO15205 165 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 PFDN6O15212 129 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 ADCY6O43306 1168 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 TIMM44O43615 452 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 TGDSO95455 350 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 KRT6AP02538 564 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 KRT6BP04259 564 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 APOA4P06727 396 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 UNGP13051 313 aaPredicted RBP7.27□□□□□ -1.25
USP3-210ENST00000559192 KCNA2P16389 499 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 PSMB4P28070 264 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 KRT6CP48668 564 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 ARPP19P56211 112 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 NUP107P57740 925 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 DMC1Q14565 340 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 PRKD1Q15139 912 aaPredicted RBP7.27□□□□□ -1.25
USP3-210ENST00000559192 MSS51Q4VC12 460 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 ATAD3BQ5T9A4 648 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 TXNRD3NBQ6F5E7 133 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 ZFP1Q6P2D0 407 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 CMC1Q7Z7K0 106 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 METTL23Q86XA0 190 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 TAGAPQ8N103 731 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 DCAKDQ8WVC6 231 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 CD101Q93033 1021 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 DGCR14Q96DF8 476 aaKnown RBP7.27□□□□□ -1.25
USP3-210ENST00000559192 PHF21BQ96EK2 531 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 EPAS1Q99814 870 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 NMRAL1Q9HBL8 299 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 RRN3Q9NYV6 651 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 MBD2Q9UBB5 411 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 IPPQ9Y573 584 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 ZNF536O15090 1300 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 MYH10P35580 1976 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 F8W8V4 182 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 MAP3K13O43283 966 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 PMPCBO75439 489 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 TM4SF1P30408 202 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 ADSSP30520 456 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 C21orf59P57076 290 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 TRAF2Q12933 501 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 FASTKQ14296 549 aaKnown RBP7.27□□□□□ -1.25
USP3-210ENST00000559192 PPM1JQ5JR12 505 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 ARCQ7LC44 396 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 DHFR2Q86XF0 187 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 TTC39CQ8N584 583 aa7.27□□□□□ -1.25
USP3-210ENST00000559192 NPAS2Q99743 824 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms