RNA–Protein interactions for RNA: ENST00000554074.1

SLIRP-203, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 3

Gene SLIRP, Length 445 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-203ENST00000554074 TTC39BQ5VTQ0 682 aaPredicted RBP6.85□□□□□ -1.31
SLIRP-203ENST00000554074 ZNF776Q68DI1 518 aaPredicted RBP6.85□□□□□ -1.31
SLIRP-203ENST00000554074 DENND1BQ6P3S1 775 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 RFWD3Q6PCD5 774 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 UNQ6494/PRO21346Q6UXR6 183 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 GBP6Q6ZN66 633 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 DBX2Q6ZNG2 339 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 GLRX5Q86SX6 157 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 TAC4Q86UU9 113 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 MFN1Q8IWA4 741 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 CCDC117Q8IWD4 279 aaPredicted RBP6.85□□□□□ -1.31
SLIRP-203ENST00000554074 SCUBE3Q8IX30 993 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 ZCCHC9Q8N567 271 aaKnown RBP6.85□□□□□ -1.31
SLIRP-203ENST00000554074 MLKLQ8NB16 471 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 WFDC5Q8TCV5 224 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 CYB5D2Q8WUJ1 264 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 SHC3Q92529 594 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 GATA6Q92908 595 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 FAM149B1Q96BN6 582 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 ERLEC1Q96DZ1 483 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 MYO19Q96H55 970 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 BTN2A3PQ96KV6 586 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 PRICKLE1Q96MT3 831 aaPredicted RBP6.85□□□□□ -1.31
SLIRP-203ENST00000554074 MIS12Q9H081 205 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 NUCKS1Q9H1E3 243 aaKnown RBP6.85□□□□□ -1.31
SLIRP-203ENST00000554074 RSPH9Q9H1X1 276 aaPredicted RBP6.85□□□□□ -1.31
SLIRP-203ENST00000554074 POPDC2Q9HBU9 364 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 SGK2Q9HBY8 427 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 FSCN3Q9NQT6 498 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 ST7Q9NRC1 585 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.85□□□□□ -1.31
SLIRP-203ENST00000554074 APEX2Q9UBZ4 518 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 PCDHGC3Q9UN70 934 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 NAALADL1Q9UQQ1 740 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 ZBTB32Q9Y2Y4 487 aaPredicted RBP6.85□□□□□ -1.31
SLIRP-203ENST00000554074 DMXL2Q8TDJ6 3036 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 MYLKQ15746 1914 aa6.85□□□□□ -1.31
SLIRP-203ENST00000554074 ANKRD11Q6UB99 2663 aaPredicted RBP6.84□□□□□ -1.31
SLIRP-203ENST00000554074 ZZEF1O43149 2961 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 GOLGA6L7A0A1B0GV03 622 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 SPAARA0A1B0GVQ0 90 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 TARSL2A2RTX5 802 aaKnown RBP6.84□□□□□ -1.31
SLIRP-203ENST00000554074 BECN2A8MW95 431 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 C10orf142B7Z368 130 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 E5RJQ4 531 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 PIK3R2O00459 728 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 CAPN9O14815 690 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 THAP12O43422 761 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 HSF2BPO75031 334 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 CBFA2T3O75081 653 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 MOCS3O95396 460 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 SEMA4FO95754 770 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 TRUB2O95900 331 aaKnown RBP6.84□□□□□ -1.31
SLIRP-203ENST00000554074 CALCAP01258 141 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 DNTTP04053 509 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 HLA-EP13747 358 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 CD27P26842 260 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 MAOBP27338 520 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 ACSL1P33121 698 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 CSKP41240 450 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 MATKP42679 507 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 GRIA4P48058 902 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 AFF3P51826 1226 aaKnown RBP6.84□□□□□ -1.31
SLIRP-203ENST00000554074 PLK1P53350 603 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 OXCT1P55809 520 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 SNX16P57768 344 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 ST8SIA6P61647 398 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 RPS24P62847 133 aaKnown RBP6.84□□□□□ -1.31
SLIRP-203ENST00000554074 SIM1P81133 766 aaPredicted RBP6.84□□□□□ -1.31
SLIRP-203ENST00000554074 CDH18Q13634 790 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 TRIP6Q15654 476 aaKnown RBP6.84□□□□□ -1.31
SLIRP-203ENST00000554074 EXOC3L4Q17RC7 722 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 SKOR2Q2VWA4 1001 aaPredicted RBP6.84□□□□□ -1.31
SLIRP-203ENST00000554074 HNRNPA1L2Q32P51 320 aaKnown RBP6.84□□□□□ -1.31
SLIRP-203ENST00000554074 DCAF6Q58WW2 860 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 CT47A1Q5JQC4 288 aaPredicted RBP6.84□□□□□ -1.31
SLIRP-203ENST00000554074 PITRM1Q5JRX3 1037 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 EFHC1Q5JVL4 640 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 SYPL2Q5VXT5 272 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 RAB44Q7Z6P3 723 aaPredicted RBP6.84□□□□□ -1.31
SLIRP-203ENST00000554074 IRF2BP1Q8IU81 584 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 NAXDQ8IW45 347 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 ATP6V0D2Q8N8Y2 350 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 MRGPRX3Q96LB0 322 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 SLC2A13Q96QE2 648 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 PPP1R9BQ96SB3 815 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 SCNM1Q9BWG6 230 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 BTBD1Q9H0C5 482 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 TMEM51Q9NW97 253 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 KIAA1522Q9P206 1035 aaPredicted RBP6.84□□□□□ -1.31
SLIRP-203ENST00000554074 TJP2Q9UDY2 1190 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 SLC12A6Q9UHW9 1150 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 EIF2B4Q9UI10 523 aaKnown RBP6.84□□□□□ -1.31
SLIRP-203ENST00000554074 CYTH4Q9UIA0 394 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 INTS6Q9UL03 887 aaKnown RBP6.84□□□□□ -1.31
SLIRP-203ENST00000554074 FZD4Q9ULV1 537 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 TPX2Q9ULW0 747 aaKnown RBP6.84□□□□□ -1.31
SLIRP-203ENST00000554074 MSRB2Q9Y3D2 182 aa6.84□□□□□ -1.31
SLIRP-203ENST00000554074 PKD1L2Q7Z442 2459 aa6.84□□□□□ -1.32
SLIRP-203ENST00000554074 EDDM13A0A1B0GTR0 161 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms