RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 VAV1P15498 845 aa11.07□□□□□ -0.64
CLIP1-210ENST00000538120 ATP2A2P16615 1042 aaKnown RBP11.07□□□□□ -0.64
CLIP1-210ENST00000538120 TARSP26639 723 aaKnown RBP11.07□□□□□ -0.64
CLIP1-210ENST00000538120 ADRA1BP35368 520 aa11.07□□□□□ -0.64
CLIP1-210ENST00000538120 ABL2P42684 1182 aa11.07□□□□□ -0.64
CLIP1-210ENST00000538120 DPYSQ14117 519 aa11.07□□□□□ -0.64
CLIP1-210ENST00000538120 EFTUD2Q15029 972 aaKnown RBP eCLIP11.07□□□□□ -0.64
CLIP1-210ENST00000538120 TMED2Q15363 201 aa11.07□□□□□ -0.64
CLIP1-210ENST00000538120 FAM72AQ5TYM5 149 aa11.07□□□□□ -0.64
CLIP1-210ENST00000538120 NAIF1Q69YI7 327 aaPredicted RBP11.07□□□□□ -0.64
CLIP1-210ENST00000538120 PM20D1Q6GTS8 502 aa11.07□□□□□ -0.64
CLIP1-210ENST00000538120 FAM72DQ6L9T8 149 aa11.07□□□□□ -0.64
CLIP1-210ENST00000538120 FAM72BQ86X60 149 aa11.07□□□□□ -0.64
CLIP1-210ENST00000538120 PDIK1LQ8N165 341 aa11.07□□□□□ -0.64
CLIP1-210ENST00000538120 NETO2Q8NC67 525 aa11.07□□□□□ -0.64
CLIP1-210ENST00000538120 PGAP3Q96FM1 320 aaPredicted RBP11.07□□□□□ -0.64
CLIP1-210ENST00000538120 REPIN1Q9BWE0 567 aaKnown RBP11.07□□□□□ -0.64
CLIP1-210ENST00000538120 DSEQ9UL01 958 aa11.07□□□□□ -0.64
CLIP1-210ENST00000538120 TEX264Q9Y6I9 313 aa11.07□□□□□ -0.64
CLIP1-210ENST00000538120 MFSD11O43934 449 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 TOMM70O94826 608 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 LTFP02788 710 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 GM2AP17900 193 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 ARL4AP40617 200 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 ELK3P41970 407 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 DSC1Q08554 894 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 SEMA3BQ13214 749 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 ZRSR2Q15696 482 aaKnown RBP11.06□□□□□ -0.64
CLIP1-210ENST00000538120 RNF43Q68DV7 783 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 OVOS1Q6IE37 1185 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 ARHGEF18Q6ZSZ5 1173 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 C3orf62Q6ZUJ4 267 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 TRABD2AQ86V40 505 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 CAND1Q86VP6 1230 aaKnown RBP11.06□□□□□ -0.64
CLIP1-210ENST00000538120 ATP11CQ8NB49 1132 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 NTAN1Q96AB6 310 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 ERP27Q96DN0 273 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 SLC9A7Q96T83 725 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 DHRS4Q9BTZ2 278 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 NKIRAS1Q9NYS0 192 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 HAO1Q9UJM8 370 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 GRID1Q9ULK0 1009 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 CHKBQ9Y259 395 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 ACTL7BQ9Y614 415 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 BRCA2P51587 3418 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 COL4A4P53420 1690 aaPredicted RBP11.06□□□□□ -0.64
CLIP1-210ENST00000538120 CAPN9O14815 690 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 PIAS1O75925 651 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 EOMESO95936 686 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 NCAM1P13591 858 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 TSHRP16473 764 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 TYMPP19971 482 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 DNAJB2P25686 324 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 SCAPQ12770 1279 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 RASA2Q15283 850 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 PKN2Q16513 984 aaKnown RBP11.06□□□□□ -0.64
CLIP1-210ENST00000538120 SLC24A5Q71RS6 500 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 FBF1Q8TES7 1133 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 EDEM1Q92611 657 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 LGMNQ99538 433 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 PLAC1Q9HBJ0 212 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 SLC24A2Q9UI40 661 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 FBXW11Q9UKB1 542 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 CHMP2BQ9UQN3 213 aa11.06□□□□□ -0.64
CLIP1-210ENST00000538120 H3BRJ5 948 aa11.05□□□□□ -0.64
CLIP1-210ENST00000538120 DCLK1O15075 740 aa11.05□□□□□ -0.64
CLIP1-210ENST00000538120 SMNDC1O75940 238 aaKnown RBP eCLIP11.05□□□□□ -0.64
CLIP1-210ENST00000538120 GPNMBQ14956 572 aa11.05□□□□□ -0.64
CLIP1-210ENST00000538120 PAFAH1B3Q15102 231 aaKnown RBP11.05□□□□□ -0.64
CLIP1-210ENST00000538120 ZNF534Q76KX8 674 aa11.05□□□□□ -0.64
CLIP1-210ENST00000538120 TP53INP2Q8IXH6 220 aa11.05□□□□□ -0.64
CLIP1-210ENST00000538120 SCML4Q8N228 414 aa11.05□□□□□ -0.64
CLIP1-210ENST00000538120 IRGQQ8WZA9 623 aa11.05□□□□□ -0.64
CLIP1-210ENST00000538120 ACSS3Q9H6R3 686 aa11.05□□□□□ -0.64
CLIP1-210ENST00000538120 STARD7Q9NQZ5 370 aa11.05□□□□□ -0.64
CLIP1-210ENST00000538120 FETUBQ9UGM5 382 aa11.05□□□□□ -0.64
CLIP1-210ENST00000538120 FRMPD3Q5JV73 1810 aa11.05□□□□□ -0.64
CLIP1-210ENST00000538120 HACD1B0YJ81 288 aa11.04□□□□□ -0.64
CLIP1-210ENST00000538120 ASMTLO95671 621 aa11.04□□□□□ -0.64
CLIP1-210ENST00000538120 C1QAP02745 245 aa11.04□□□□□ -0.64
CLIP1-210ENST00000538120 GEMIN4P57678 1058 aaKnown RBP11.04□□□□□ -0.64
CLIP1-210ENST00000538120 PRKD1Q15139 912 aaPredicted RBP11.04□□□□□ -0.64
CLIP1-210ENST00000538120 GLB1LQ6UWU2 654 aa11.04□□□□□ -0.64
CLIP1-210ENST00000538120 RFX8Q6ZV50 586 aa11.04□□□□□ -0.64
CLIP1-210ENST00000538120 PALM2Q8IXS6 379 aa11.04□□□□□ -0.64
CLIP1-210ENST00000538120 COLGALT2Q8IYK4 626 aa11.04□□□□□ -0.64
CLIP1-210ENST00000538120 C4orf33Q8N1A6 199 aa11.04□□□□□ -0.64
CLIP1-210ENST00000538120 TFB1MQ8WVM0 346 aaKnown RBP11.04□□□□□ -0.64
CLIP1-210ENST00000538120 HTR3CQ8WXA8 447 aa11.04□□□□□ -0.64
CLIP1-210ENST00000538120 KLC2Q9H0B6 622 aa11.04□□□□□ -0.64
CLIP1-210ENST00000538120 DMAP1Q9NPF5 467 aaPredicted RBP11.04□□□□□ -0.64
CLIP1-210ENST00000538120 PHTF1Q9UMS5 762 aa11.04□□□□□ -0.64
CLIP1-210ENST00000538120 SNX10Q9Y5X0 201 aa11.04□□□□□ -0.64
CLIP1-210ENST00000538120 FAM47DPA6NHR8 397 aa11.04□□□□□ -0.64
CLIP1-210ENST00000538120 KBTBD13C9JR72 458 aa11.04□□□□□ -0.64
CLIP1-210ENST00000538120 ARVCFO00192 962 aa11.04□□□□□ -0.64
CLIP1-210ENST00000538120 EEF2KO00418 725 aaKnown RBP11.04□□□□□ -0.64
CLIP1-210ENST00000538120 T-ENOLP0DO92 83 aa11.04□□□□□ -0.64
CLIP1-210ENST00000538120 PHBP35232 272 aa11.04□□□□□ -0.64
CLIP1-210ENST00000538120 PEX19P40855 299 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms