RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 HDAC4P56524 1084 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 RPL7AP62424 266 aaKnown RBP13.41□□□□□ -0.26
VPS28-216ENST00000533806 ATP11AP98196 1134 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 LMAN2Q12907 356 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 PTPRNQ16849 979 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 C15orf59Q2T9L4 293 aaPredicted RBP13.41□□□□□ -0.26
VPS28-216ENST00000533806 FUT11Q495W5 492 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 ACBD5Q5T8D3 534 aaPredicted RBP13.41□□□□□ -0.26
VPS28-216ENST00000533806 TTC39BQ5VTQ0 682 aaPredicted RBP13.41□□□□□ -0.26
VPS28-216ENST00000533806 HEATR6Q6AI08 1181 aaKnown RBP13.41□□□□□ -0.26
VPS28-216ENST00000533806 STRADAQ7RTN6 431 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 GAS2L3Q86XJ1 694 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 DNAAF5Q86Y56 855 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 MFN1Q8IWA4 741 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 ZNF557Q8N988 423 aaPredicted RBP13.41□□□□□ -0.26
VPS28-216ENST00000533806 MDGA1Q8NFP4 955 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 TSTD1Q8NFU3 115 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 WFIKKN2Q8TEU8 576 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 SORCS1Q8WY21 1168 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 NKD2Q969F2 451 aaPredicted RBP13.41□□□□□ -0.26
VPS28-216ENST00000533806 TTC17Q96AE7 1141 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 HAPLN3Q96S86 360 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 RBSNQ9H1K0 784 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 STIM2Q9P246 746 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 ARHGAP20Q9P2F6 1191 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 ADAMTS1Q9UHI8 967 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 NENFQ9UMX5 172 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 PAXBP1Q9Y5B6 917 aa13.41□□□□□ -0.26
VPS28-216ENST00000533806 OTOGLQ3ZCN5 2332 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 GVINP1Q7Z2Y8 2422 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 ATG2BQ96BY7 2078 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 AXIN1O15169 862 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 PLEKP08567 350 aaPredicted RBP13.4□□□□□ -0.26
VPS28-216ENST00000533806 SDC4P31431 198 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 ADRA1BP35368 520 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 IL12RB1P42701 662 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 ZNF143P52747 638 aaPredicted RBP13.4□□□□□ -0.26
VPS28-216ENST00000533806 PLK1P53350 603 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 OGDHQ02218 1023 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 TBX2Q13207 712 aaPredicted RBP13.4□□□□□ -0.26
VPS28-216ENST00000533806 SRSF5Q13243 272 aaKnown RBP13.4□□□□□ -0.26
VPS28-216ENST00000533806 ZNF234Q14588 700 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 CXorf57Q6NSI4 855 aaKnown RBP13.4□□□□□ -0.26
VPS28-216ENST00000533806 KIAA1211LQ6NV74 962 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 DNAJC24Q6P3W2 148 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 SND1Q7KZF4 910 aaKnown RBP eCLIP13.4□□□□□ -0.26
VPS28-216ENST00000533806 CHST9Q7L1S5 443 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 CIR1Q86X95 450 aaPredicted RBP13.4□□□□□ -0.26
VPS28-216ENST00000533806 FAM131BQ86XD5 332 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 CHPFQ8IZ52 775 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 AHI1Q8N157 1196 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 CCAR2Q8N163 923 aaKnown RBP13.4□□□□□ -0.26
VPS28-216ENST00000533806 ALG14Q96F25 216 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 MYO19Q96H55 970 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 SELENOOQ9BVL4 669 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 TMEM245Q9H330 911 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 CACNA2D2Q9NY47 1150 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 ZNF212Q9UDV6 495 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 TBC1D30Q9Y2I9 924 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 STON1Q9Y6Q2 735 aa13.4□□□□□ -0.26
VPS28-216ENST00000533806 EP300Q09472 2414 aaPredicted RBP13.39□□□□□ -0.27
VPS28-216ENST00000533806 A0A087X0T9 212 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 A0A1B0GVM2 712 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 TCAF2A6NFQ2 919 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 TMEM191CA6NGB0 347 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 TMCO5BA8MYB1 307 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 LMNAP02545 664 aaKnown RBP13.39□□□□□ -0.27
VPS28-216ENST00000533806 DLDP09622 509 aaKnown RBP13.39□□□□□ -0.27
VPS28-216ENST00000533806 FAM228BP0C875 321 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 HOXB2P14652 356 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 GPD1P21695 349 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 GGCXP38435 758 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 WASP42768 502 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 NRG1Q02297 640 aaPredicted RBP13.39□□□□□ -0.27
VPS28-216ENST00000533806 TRIM14Q14142 442 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 ASTE1Q2TB18 679 aaPredicted RBP13.39□□□□□ -0.27
VPS28-216ENST00000533806 RABGAP1LQ5R372 815 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 MANEALQ5VSG8 457 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 MBLAC2Q68D91 279 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 ALYREFQ86V81 257 aaKnown RBP13.39□□□□□ -0.27
VPS28-216ENST00000533806 CARNMT1Q8N4J0 409 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 OR8K1Q8NGG5 319 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 OR52K2Q8NGK3 314 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 FAM172AQ8WUF8 416 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 UCMAQ8WVF2 138 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 GAB3Q8WWW8 586 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 MRGPRX3Q96LB0 322 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 RPRD1AQ96P16 312 aaPredicted RBP13.39□□□□□ -0.27
VPS28-216ENST00000533806 MCEEQ96PE7 176 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 CNPY3Q9BT09 278 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 CIPCQ9C0C6 399 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 SIK2Q9H0K1 926 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 POLMQ9NP87 494 aaPredicted RBP13.39□□□□□ -0.27
VPS28-216ENST00000533806 PARVAQ9NVD7 372 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 VANGL2Q9ULK5 521 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 OR51B4Q9Y5P0 310 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 SNX10Q9Y5X0 201 aa13.39□□□□□ -0.27
VPS28-216ENST00000533806 TYW5A2RUC4 315 aaKnown RBP13.38□□□□□ -0.27
VPS28-216ENST00000533806 CCP110O43303 1012 aa13.38□□□□□ -0.27
VPS28-216ENST00000533806 CLDN11O75508 207 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms