RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 RALGPS2Q86X27 583 aaPredicted RBP30.54■■■□□ 2.48
LIMCH1-211ENST00000509638 RHOT1Q8IXI2 618 aa30.54■■■□□ 2.48
LIMCH1-211ENST00000509638 SYCE1Q8N0S2 351 aa30.54■■■□□ 2.48
LIMCH1-211ENST00000509638 TBC1D31Q96DN5 1066 aa30.54■■■□□ 2.48
LIMCH1-211ENST00000509638 DNAJC17Q9NVM6 304 aaKnown RBP30.54■■■□□ 2.48
LIMCH1-211ENST00000509638 A0A1B0GVM2 712 aa30.54■■■□□ 2.48
LIMCH1-211ENST00000509638 TCAF2A6NFQ2 919 aa30.54■■■□□ 2.48
LIMCH1-211ENST00000509638 GLULP15104 373 aa30.54■■■□□ 2.48
LIMCH1-211ENST00000509638 OPRD1P41143 372 aa30.54■■■□□ 2.48
LIMCH1-211ENST00000509638 AMPD2Q01433 879 aa30.54■■■□□ 2.48
LIMCH1-211ENST00000509638 ATP13A4Q4VNC1 1196 aa30.54■■■□□ 2.48
LIMCH1-211ENST00000509638 REXO1L1PQ8IX06 675 aa30.54■■■□□ 2.48
LIMCH1-211ENST00000509638 SIX5Q8N196 739 aa30.54■■■□□ 2.48
LIMCH1-211ENST00000509638 MSANTD3Q96H12 275 aa30.54■■■□□ 2.48
LIMCH1-211ENST00000509638 XPO6Q96QU8 1125 aaKnown RBP30.54■■■□□ 2.48
LIMCH1-211ENST00000509638 MPP6Q9NZW5 540 aa30.54■■■□□ 2.48
LIMCH1-211ENST00000509638 KRBA1A5PL33 1030 aa30.53■■■□□ 2.48
LIMCH1-211ENST00000509638 PSTPIP1O43586 416 aa30.53■■■□□ 2.48
LIMCH1-211ENST00000509638 CNTN5O94779 1100 aa30.53■■■□□ 2.48
LIMCH1-211ENST00000509638 TPI1P60174 286 aa30.53■■■□□ 2.48
LIMCH1-211ENST00000509638 ALFQ53S48 1182 aa30.53■■■□□ 2.48
LIMCH1-211ENST00000509638 ZFYVE27Q5T4F4 411 aa30.53■■■□□ 2.48
LIMCH1-211ENST00000509638 LRRC38Q5VT99 294 aa30.53■■■□□ 2.48
LIMCH1-211ENST00000509638 MFN1Q8IWA4 741 aa30.53■■■□□ 2.48
LIMCH1-211ENST00000509638 ZYG11BQ9C0D3 744 aa30.53■■■□□ 2.48
LIMCH1-211ENST00000509638 PPARGC1AQ9UBK2 798 aaKnown RBP30.53■■■□□ 2.48
LIMCH1-211ENST00000509638 CLEC4EQ9ULY5 219 aa30.53■■■□□ 2.48
LIMCH1-211ENST00000509638 DRGXA6NNA5 263 aa30.52■■■□□ 2.48
LIMCH1-211ENST00000509638 TULP3O75386 442 aa30.52■■■□□ 2.48
LIMCH1-211ENST00000509638 LUC7L3O95232 432 aaKnown RBP30.52■■■□□ 2.48
LIMCH1-211ENST00000509638 FTCDO95954 541 aa30.52■■■□□ 2.48
LIMCH1-211ENST00000509638 CDH18Q13634 790 aa30.52■■■□□ 2.48
LIMCH1-211ENST00000509638 KRT81Q14533 505 aa30.52■■■□□ 2.48
LIMCH1-211ENST00000509638 TFAP2DQ7Z6R9 452 aa30.52■■■□□ 2.48
LIMCH1-211ENST00000509638 CCAR2Q8N163 923 aaKnown RBP30.52■■■□□ 2.48
LIMCH1-211ENST00000509638 CARNMT1Q8N4J0 409 aa30.52■■■□□ 2.48
LIMCH1-211ENST00000509638 WFDC5Q8TCV5 224 aa30.52■■■□□ 2.48
LIMCH1-211ENST00000509638 CD101Q93033 1021 aa30.52■■■□□ 2.48
LIMCH1-211ENST00000509638 ALS2CR12Q96Q35 445 aa30.52■■■□□ 2.48
LIMCH1-211ENST00000509638 PCDH18Q9HCL0 1135 aa30.52■■■□□ 2.48
LIMCH1-211ENST00000509638 USP27XA6NNY8 438 aa30.51■■■□□ 2.47
LIMCH1-211ENST00000509638 EEF2KO00418 725 aaKnown RBP30.51■■■□□ 2.47
LIMCH1-211ENST00000509638 GOT1P17174 413 aa30.51■■■□□ 2.47
LIMCH1-211ENST00000509638 EPHB2P29323 1055 aa30.51■■■□□ 2.47
LIMCH1-211ENST00000509638 EIF2DP41214 584 aaKnown RBP30.51■■■□□ 2.47
LIMCH1-211ENST00000509638 SLC6A11P48066 632 aa30.51■■■□□ 2.47
LIMCH1-211ENST00000509638 MARCKSL1P49006 195 aa30.51■■■□□ 2.47
LIMCH1-211ENST00000509638 CDH6P55285 790 aa30.51■■■□□ 2.47
LIMCH1-211ENST00000509638 PRKCQQ04759 706 aa30.51■■■□□ 2.47
LIMCH1-211ENST00000509638 KDSRQ06136 332 aa30.51■■■□□ 2.47
LIMCH1-211ENST00000509638 PEX26Q7Z412 305 aa30.51■■■□□ 2.47
LIMCH1-211ENST00000509638 EDAQ92838 391 aa30.51■■■□□ 2.47
LIMCH1-211ENST00000509638 TECTAO75443 2155 aa30.51■■■□□ 2.47
LIMCH1-211ENST00000509638 SHISA7A6NL88 538 aa30.5■■■□□ 2.47
LIMCH1-211ENST00000509638 HOXC13P31276 330 aa30.5■■■□□ 2.47
LIMCH1-211ENST00000509638 SIGLEC14Q08ET2 396 aa30.5■■■□□ 2.47
LIMCH1-211ENST00000509638 CHST9Q7L1S5 443 aa30.5■■■□□ 2.47
LIMCH1-211ENST00000509638 NT5DC3Q86UY8 548 aa30.5■■■□□ 2.47
LIMCH1-211ENST00000509638 DEC1Q9P2X7 70 aa30.5■■■□□ 2.47
LIMCH1-211ENST00000509638 TRIM24O15164 1050 aa30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 CLDN11O75508 207 aa30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 KRT1P04264 644 aa30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 HTR7P34969 479 aa30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 CDH4P55283 916 aa30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 MESP2Q0VG99 397 aa30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 C1orf228Q6PIY5 440 aa30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 RFX8Q6ZV50 586 aa30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 KCTD6Q8NC69 237 aa30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 KRT35Q92764 455 aa30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 P2RY13Q9BPV8 354 aa30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 PALM2-AKAP2B1ALY0 433 aaPredicted RBP30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 H0Y626 953 aa30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 CD48P09326 243 aa30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 CD72P21854 359 aa30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 CTNNA1P35221 906 aaKnown RBP30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 ARL4AP40617 200 aa30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 DGKGP49619 791 aa30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 ZNF135P52742 658 aaPredicted RBP30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 PON2Q15165 354 aa30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 GRAMD4Q6IC98 578 aa30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 CCDC117Q8IWD4 279 aaPredicted RBP30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 FAM3CQ92520 227 aa30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 CALN1Q9BXU9 219 aa30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 SLC2A11Q9BYW1 496 aa30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 CWC15Q9P013 229 aaKnown RBP30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 FBXO10Q9UK96 956 aa30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 AMFRQ9UKV5 643 aa30.49■■■□□ 2.47
LIMCH1-211ENST00000509638 LRRD1A4D1F6 860 aa30.48■■■□□ 2.47
LIMCH1-211ENST00000509638 H3BRJ5 948 aa30.48■■■□□ 2.47
LIMCH1-211ENST00000509638 ALADP13716 330 aa30.48■■■□□ 2.47
LIMCH1-211ENST00000509638 ARSEP51690 589 aa30.48■■■□□ 2.47
LIMCH1-211ENST00000509638 DPYSL3Q14195 570 aa30.48■■■□□ 2.47
LIMCH1-211ENST00000509638 PHTF2Q8N3S3 785 aa30.48■■■□□ 2.47
LIMCH1-211ENST00000509638 RAPGEF5Q92565 580 aa30.48■■■□□ 2.47
LIMCH1-211ENST00000509638 SHDQ96IW2 340 aa30.48■■■□□ 2.47
LIMCH1-211ENST00000509638 ARHGEF4Q9NR80 690 aa30.48■■■□□ 2.47
LIMCH1-211ENST00000509638 DDX56Q9NY93 547 aaKnown RBP30.48■■■□□ 2.47
LIMCH1-211ENST00000509638 ZNF212Q9UDV6 495 aa30.48■■■□□ 2.47
LIMCH1-211ENST00000509638 PACSIN2Q9UNF0 486 aaPredicted RBP30.48■■■□□ 2.47
LIMCH1-211ENST00000509638 SBDSQ9Y3A5 250 aaKnown RBP eCLIP30.48■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms