RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 RRM1P23921 792 aa16.46■□□□□ 0.23
LIME1-209ENST00000494776 CD70P32970 193 aa16.46■□□□□ 0.23
LIME1-209ENST00000494776 GGCXP38435 758 aa16.46■□□□□ 0.23
LIME1-209ENST00000494776 PTPN9P43378 593 aa16.46■□□□□ 0.23
LIME1-209ENST00000494776 SRSF5Q13243 272 aaKnown RBP16.46■□□□□ 0.23
LIME1-209ENST00000494776 STARD3Q14849 445 aa16.46■□□□□ 0.23
LIME1-209ENST00000494776 TSR1Q2NL82 804 aaKnown RBP16.46■□□□□ 0.23
LIME1-209ENST00000494776 ARL13BQ3SXY8 428 aa16.46■□□□□ 0.23
LIME1-209ENST00000494776 MBLAC2Q68D91 279 aa16.46■□□□□ 0.23
LIME1-209ENST00000494776 WDR59Q6PJI9 974 aa16.46■□□□□ 0.23
LIME1-209ENST00000494776 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.46■□□□□ 0.23
LIME1-209ENST00000494776 HMGB4Q8WW32 186 aa16.46■□□□□ 0.23
LIME1-209ENST00000494776 SORCS1Q8WY21 1168 aa16.46■□□□□ 0.23
LIME1-209ENST00000494776 ERLEC1Q96DZ1 483 aa16.46■□□□□ 0.23
LIME1-209ENST00000494776 HINFPQ9BQA5 517 aa16.46■□□□□ 0.23
LIME1-209ENST00000494776 PARVAQ9NVD7 372 aa16.46■□□□□ 0.23
LIME1-209ENST00000494776 KIAA1522Q9P206 1035 aaPredicted RBP16.46■□□□□ 0.23
LIME1-209ENST00000494776 THAP10Q9P2Z0 257 aaPredicted RBP16.46■□□□□ 0.23
LIME1-209ENST00000494776 STON1Q9Y6Q2 735 aa16.46■□□□□ 0.23
LIME1-209ENST00000494776 ZFHX2Q9C0A1 2572 aaPredicted RBP16.45■□□□□ 0.22
LIME1-209ENST00000494776 PTPRZ1P23471 2315 aaPredicted RBP16.45■□□□□ 0.22
LIME1-209ENST00000494776 A0A1B0GVM2 712 aa16.45■□□□□ 0.22
LIME1-209ENST00000494776 TCAF2A6NFQ2 919 aa16.45■□□□□ 0.22
LIME1-209ENST00000494776 WASH3PC4AMC7 463 aa16.45■□□□□ 0.22
LIME1-209ENST00000494776 DDX3XO00571 662 aaKnown RBP eCLIP16.45■□□□□ 0.225e-9■■□□□ 12.7
LIME1-209ENST00000494776 HRO43593 1189 aa16.45■□□□□ 0.22
LIME1-209ENST00000494776 SYNCRIPO60506 623 aaKnown RBP16.45■□□□□ 0.22
LIME1-209ENST00000494776 RPP40O75818 363 aaKnown RBP16.45■□□□□ 0.22
LIME1-209ENST00000494776 LMAN2Q12907 356 aa16.45■□□□□ 0.22
LIME1-209ENST00000494776 ZNF234Q14588 700 aa16.45■□□□□ 0.22
LIME1-209ENST00000494776 FNDC3BQ53EP0 1204 aaKnown RBP16.45■□□□□ 0.22
LIME1-209ENST00000494776 USP39Q53GS9 565 aaKnown RBP16.45■□□□□ 0.22
LIME1-209ENST00000494776 ACBD5Q5T8D3 534 aaPredicted RBP16.45■□□□□ 0.22
LIME1-209ENST00000494776 TMEM215Q68D42 235 aa16.45■□□□□ 0.22
LIME1-209ENST00000494776 RNF43Q68DV7 783 aa16.45■□□□□ 0.22
LIME1-209ENST00000494776 SERPINA13PQ6UXR4 307 aa16.45■□□□□ 0.22
LIME1-209ENST00000494776 STRADAQ7RTN6 431 aa16.45■□□□□ 0.22
LIME1-209ENST00000494776 ASCL5Q7RTU5 278 aa16.45■□□□□ 0.22
LIME1-209ENST00000494776 CIR1Q86X95 450 aaPredicted RBP16.45■□□□□ 0.22
LIME1-209ENST00000494776 CCAR2Q8N163 923 aaKnown RBP16.45■□□□□ 0.22
LIME1-209ENST00000494776 FAM172AQ8WUF8 416 aa16.45■□□□□ 0.22
LIME1-209ENST00000494776 CYB5D2Q8WUJ1 264 aa16.45■□□□□ 0.22
LIME1-209ENST00000494776 TRIM11Q96F44 468 aa16.45■□□□□ 0.22
LIME1-209ENST00000494776 GABRG3Q99928 467 aa16.45■□□□□ 0.22
LIME1-209ENST00000494776 TPSD1Q9BZJ3 242 aa16.45■□□□□ 0.22
LIME1-209ENST00000494776 TRIM5Q9C035 493 aa16.45■□□□□ 0.22
LIME1-209ENST00000494776 EPC1Q9H2F5 836 aa16.45■□□□□ 0.22
LIME1-209ENST00000494776 ADAMTS1Q9UHI8 967 aa16.45■□□□□ 0.22
LIME1-209ENST00000494776 SMG5Q9UPR3 1016 aaKnown RBP16.45■□□□□ 0.22
LIME1-209ENST00000494776 RAD54BQ9Y620 910 aa16.45■□□□□ 0.22
LIME1-209ENST00000494776 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.44■□□□□ 0.22
LIME1-209ENST00000494776 SRGAP2O75044 1071 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 ENDOD1O94919 500 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 IL12RB1P42701 662 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 OXCT1P55809 520 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 RPL7AP62424 266 aaKnown RBP16.44■□□□□ 0.22
LIME1-209ENST00000494776 ZNF177Q13360 481 aaPredicted RBP16.44■□□□□ 0.22
LIME1-209ENST00000494776 LPAL2Q16609 132 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 FSCBQ5H9T9 825 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 SH3PXD2AQ5TCZ1 1133 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 HGSNATQ68CP4 663 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 BNIPLQ7Z465 357 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 KIAA0907Q7Z7F0 614 aaPredicted RBP16.44■□□□□ 0.22
LIME1-209ENST00000494776 C14orf80Q86SX3 495 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 ADIPOR2Q86V24 386 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 DNAAF5Q86Y56 855 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 VSTM4Q8IW00 320 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 MDGA1Q8NFP4 955 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 OLIG1Q8TAK6 271 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 GAB3Q8WWW8 586 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 IGSF8Q969P0 613 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 ZNF653Q96CK0 615 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 C1orf74Q96LT6 269 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 HAPLN3Q96S86 360 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 PPP1R9BQ96SB3 815 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 ANLNQ9NQW6 1124 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 TMPRSS4Q9NRS4 437 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 ZNHIT6Q9NWK9 470 aaKnown RBP16.44■□□□□ 0.22
LIME1-209ENST00000494776 SNX10Q9Y5X0 201 aa16.44■□□□□ 0.22
LIME1-209ENST00000494776 TCRBV5S1A1TA0A578 114 aa16.43■□□□□ 0.22
LIME1-209ENST00000494776 ATMINO43313 823 aaPredicted RBP16.43■□□□□ 0.22
LIME1-209ENST00000494776 CLDN11O75508 207 aa16.43■□□□□ 0.22
LIME1-209ENST00000494776 EPHX1P07099 455 aa16.43■□□□□ 0.22
LIME1-209ENST00000494776 PLEKP08567 350 aaPredicted RBP16.43■□□□□ 0.22
LIME1-209ENST00000494776 DLDP09622 509 aaKnown RBP16.43■□□□□ 0.22
LIME1-209ENST00000494776 MYBL1P10243 752 aa16.43■□□□□ 0.22
LIME1-209ENST00000494776 CSKP41240 450 aa16.43■□□□□ 0.22
LIME1-209ENST00000494776 ZNF143P52747 638 aaPredicted RBP16.43■□□□□ 0.22
LIME1-209ENST00000494776 CDH4P55283 916 aa16.43■□□□□ 0.22
LIME1-209ENST00000494776 ST8SIA6P61647 398 aa16.43■□□□□ 0.22
LIME1-209ENST00000494776 MAMLD1Q13495 774 aa16.43■□□□□ 0.22
LIME1-209ENST00000494776 FUT11Q495W5 492 aa16.43■□□□□ 0.22
LIME1-209ENST00000494776 PITRM1Q5JRX3 1037 aa16.43■□□□□ 0.22
LIME1-209ENST00000494776 RNF219Q5W0B1 726 aaPredicted RBP16.43■□□□□ 0.22
LIME1-209ENST00000494776 KIAA1211LQ6NV74 962 aa16.43■□□□□ 0.22
LIME1-209ENST00000494776 SCYL2Q6P3W7 929 aa16.43■□□□□ 0.22
LIME1-209ENST00000494776 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.43■□□□□ 0.22
LIME1-209ENST00000494776 RASSF3Q86WH2 238 aa16.43■□□□□ 0.22
LIME1-209ENST00000494776 SUMF1Q8NBK3 374 aa16.43■□□□□ 0.22
LIME1-209ENST00000494776 OR8K1Q8NGG5 319 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms