RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 SNX22Q96L94 193 aa5.41□□□□□ -1.54
VPS50-214ENST00000477935 LENG8Q96PV6 779 aaPredicted RBP5.41□□□□□ -1.54
VPS50-214ENST00000477935 PARK7Q99497 189 aaKnown RBP5.41□□□□□ -1.54
VPS50-214ENST00000477935 MACROD1Q9BQ69 325 aa5.41□□□□□ -1.54
VPS50-214ENST00000477935 SARGQ9BW04 601 aa5.41□□□□□ -1.54
VPS50-214ENST00000477935 PNPLA8Q9NP80 782 aa5.41□□□□□ -1.54
VPS50-214ENST00000477935 LAMB4A4D0S4 1761 aa5.41□□□□□ -1.54
VPS50-214ENST00000477935 AQP7P3A6NL99 342 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 AP4M1O00189 453 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 PDHXO00330 501 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 FOXN3O00409 490 aaPredicted RBP5.4□□□□□ -1.54
VPS50-214ENST00000477935 INMTO95050 263 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 IL18RAPO95256 599 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 PDE8BO95263 885 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 TPH1P17752 444 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 PIK3CBP42338 1070 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 HTRA4P83105 476 aaPredicted RBP5.4□□□□□ -1.54
VPS50-214ENST00000477935 STK3Q13188 491 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 DAG1Q14118 895 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 SAFBQ15424 915 aaKnown RBP eCLIP5.4□□□□□ -1.54
VPS50-214ENST00000477935 TMEM119Q4V9L6 283 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 COBLL1Q53SF7 1204 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 COLEC12Q5KU26 742 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 MTHFD1LQ6UB35 978 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 COPS6Q7L5N1 327 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 USP38Q8NB14 1042 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 CYP2W1Q8TAV3 490 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 SMCR8Q8TEV9 937 aaPredicted RBP5.4□□□□□ -1.54
VPS50-214ENST00000477935 DPF1Q92782 380 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 VOPP1Q96AW1 172 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 ZBTB45Q96K62 511 aaPredicted RBP5.4□□□□□ -1.54
VPS50-214ENST00000477935 THAP7Q9BT49 309 aaPredicted RBP5.4□□□□□ -1.54
VPS50-214ENST00000477935 MXD3Q9BW11 206 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 VN1R3Q9BXE9 311 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 VEZTQ9HBM0 779 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 DKK4Q9UBT3 224 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 USP22Q9UPT9 525 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 FRMD4BQ9Y2L6 1034 aa5.4□□□□□ -1.54
VPS50-214ENST00000477935 MED23Q9ULK4 1368 aa5.4□□□□□ -1.55
VPS50-214ENST00000477935 DDX60Q8IY21 1712 aaKnown RBP5.4□□□□□ -1.55
VPS50-214ENST00000477935 LAMB1P07942 1786 aa5.39□□□□□ -1.55
VPS50-214ENST00000477935 NUP98P52948 1817 aa5.39□□□□□ -1.55
VPS50-214ENST00000477935 SCN9AQ15858 1988 aa5.39□□□□□ -1.55
VPS50-214ENST00000477935 LINC01548A6NM66 108 aa5.39□□□□□ -1.55
VPS50-214ENST00000477935 PSMD9O00233 223 aa5.39□□□□□ -1.55
VPS50-214ENST00000477935 TNPO2O14787 897 aaKnown RBP5.39□□□□□ -1.55
VPS50-214ENST00000477935 PMPCBO75439 489 aa5.39□□□□□ -1.55
VPS50-214ENST00000477935 PRKCGP05129 697 aa5.39□□□□□ -1.55
VPS50-214ENST00000477935 ANXA2P07355 339 aaKnown RBP5.39□□□□□ -1.55
VPS50-214ENST00000477935 NHLRC4P0CG21 123 aaPredicted RBP5.39□□□□□ -1.55
VPS50-214ENST00000477935 HGFP14210 728 aa5.39□□□□□ -1.55
VPS50-214ENST00000477935 GKP32189 559 aa5.39□□□□□ -1.55
VPS50-214ENST00000477935 PGDP52209 483 aa5.39□□□□□ -1.55
VPS50-214ENST00000477935 EIF4A1P60842 406 aaKnown RBP5.39□□□□□ -1.55
VPS50-214ENST00000477935 FKBP1AP62942 108 aaKnown RBP5.39□□□□□ -1.55
VPS50-214ENST00000477935 TIAL1Q01085 375 aaKnown RBP eCLIP5.39□□□□□ -1.55
VPS50-214ENST00000477935 SHHQ15465 462 aa5.39□□□□□ -1.55
VPS50-214ENST00000477935 PROSER3Q2NL68 480 aa5.39□□□□□ -1.55
VPS50-214ENST00000477935 CCDC152Q4G0S7 254 aa5.39□□□□□ -1.55
VPS50-214ENST00000477935 PLAG1Q6DJT9 500 aa5.39□□□□□ -1.55
VPS50-214ENST00000477935 RNF44Q7L0R7 432 aa5.39□□□□□ -1.55
VPS50-214ENST00000477935 MCM10Q7L590 875 aa5.39□□□□□ -1.55
VPS50-214ENST00000477935 SIRT6Q8N6T7 355 aa5.39□□□□□ -1.55
VPS50-214ENST00000477935 SEMA6DQ8NFY4 1073 aa5.39□□□□□ -1.55
VPS50-214ENST00000477935 PRMT6Q96LA8 375 aaPredicted RBP5.39□□□□□ -1.55
VPS50-214ENST00000477935 INO80BQ9C086 356 aaPredicted RBP5.39□□□□□ -1.55
VPS50-214ENST00000477935 FAM83DQ9H4H8 585 aa5.39□□□□□ -1.55
VPS50-214ENST00000477935 ZNF212Q9UDV6 495 aa5.39□□□□□ -1.55
VPS50-214ENST00000477935 LRRC37AA6NMS7 1700 aa5.39□□□□□ -1.55
VPS50-214ENST00000477935 ANKRD36CQ5JPF3 1778 aa5.39□□□□□ -1.55
VPS50-214ENST00000477935 CLRN2A0PK11 232 aa5.38□□□□□ -1.55
VPS50-214ENST00000477935 SMIM22K7EJ46 135 aa5.38□□□□□ -1.55
VPS50-214ENST00000477935 KPNA5O15131 536 aa5.38□□□□□ -1.55
VPS50-214ENST00000477935 SLC5A1P13866 664 aa5.38□□□□□ -1.55
VPS50-214ENST00000477935 TRIM27P14373 513 aa5.38□□□□□ -1.55
VPS50-214ENST00000477935 FPR3P25089 353 aa5.38□□□□□ -1.55
VPS50-214ENST00000477935 GNALP38405 381 aa5.38□□□□□ -1.55
VPS50-214ENST00000477935 TIRAPP58753 221 aa5.38□□□□□ -1.55
VPS50-214ENST00000477935 SUMO2P61956 95 aaKnown RBP5.38□□□□□ -1.55
VPS50-214ENST00000477935 HOXA4Q00056 320 aaPredicted RBP5.38□□□□□ -1.55
VPS50-214ENST00000477935 KCNAB1Q14722 419 aa5.38□□□□□ -1.55
VPS50-214ENST00000477935 RNASE12Q5GAN4 147 aaKnown RBP5.38□□□□□ -1.55
VPS50-214ENST00000477935 KRTAP5-3Q6L8H2 238 aa5.38□□□□□ -1.55
VPS50-214ENST00000477935 KIRREL2Q6UWL6 708 aa5.38□□□□□ -1.55
VPS50-214ENST00000477935 TRIM72Q6ZMU5 477 aa5.38□□□□□ -1.55
VPS50-214ENST00000477935 ZNF782Q6ZMW2 699 aaPredicted RBP5.38□□□□□ -1.55
VPS50-214ENST00000477935 FASTKD5Q7L8L6 764 aaKnown RBP5.38□□□□□ -1.55
VPS50-214ENST00000477935 RAB11FIP4Q86YS3 637 aa5.38□□□□□ -1.55
VPS50-214ENST00000477935 ANKRD18AQ8IVF6 992 aa5.38□□□□□ -1.55
VPS50-214ENST00000477935 CCAR1Q8IX12 1150 aaKnown RBP5.38□□□□□ -1.55
VPS50-214ENST00000477935 SDR16C5Q8N3Y7 309 aa5.38□□□□□ -1.55
VPS50-214ENST00000477935 POLR3GLQ9BT43 218 aa5.38□□□□□ -1.55
VPS50-214ENST00000477935 EPHX3Q9H6B9 360 aa5.38□□□□□ -1.55
VPS50-214ENST00000477935 TBC1D23Q9NUY8 699 aa5.38□□□□□ -1.55
VPS50-214ENST00000477935 MIS18AQ9NYP9 233 aa5.38□□□□□ -1.55
VPS50-214ENST00000477935 AMFRQ9UKV5 643 aa5.38□□□□□ -1.55
VPS50-214ENST00000477935 CAPN11Q9UMQ6 739 aa5.38□□□□□ -1.55
VPS50-214ENST00000477935 SLC45A1Q9Y2W3 748 aa5.38□□□□□ -1.55
VPS50-214ENST00000477935 CACNA1GO43497 2377 aa5.38□□□□□ -1.55
VPS50-214ENST00000477935 SIPA1L3O60292 1781 aaPredicted RBP5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms