RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 DLDP09622 509 aaKnown RBP16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 CLCN1P35523 988 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 TPMTP51580 245 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 FAM193AP78312 1265 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 SIM1P81133 766 aaPredicted RBP16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 CDH18Q13634 790 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 PTPRNQ16849 979 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 SYCP2LQ5T4T6 812 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 OR6B2Q6IFH4 312 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 FAM183BPQ6ZVS7 135 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 METTL3Q86U44 580 aaKnown RBP16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 FAM124AQ86V42 546 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 CCDC117Q8IWD4 279 aaPredicted RBP16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 DEFB106AQ8N104 65 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 HDDC3Q8N4P3 179 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 MINDY1Q8N5J2 469 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 ATP6V0D2Q8N8Y2 350 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 FIBINQ8TAL6 211 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 ZNF419Q96HQ0 510 aaPredicted RBP16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 NOX5Q96PH1 765 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 TMEM245Q9H330 911 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 SYNCQ9H7C4 482 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 WSB2Q9NYS7 404 aaPredicted RBP16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 KLK13Q9UKR3 277 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 CEP83Q9Y592 693 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 FHOD1Q9Y613 1164 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 AKAP13Q12802 2813 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 IGF2RP11717 2491 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 FAM170AA1A519 330 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 LUC7L3O95232 432 aaKnown RBP16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 ERBB2P04626 1255 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 TACR2P21452 398 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 MAOBP27338 520 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 OXTRP30559 389 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 CDK17Q00537 523 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 KCNMA1Q12791 1236 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 CAMK2GQ13555 558 aaPredicted RBP16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 DRAP1Q14919 205 aaPredicted RBP16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 PTPN20Q4JDL3 420 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 FSCBQ5H9T9 825 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 MMS22LQ6ZRQ5 1243 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 CLEC17AQ6ZS10 378 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 C11orf57Q6ZUT1 292 aaPredicted RBP16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 RABEPKQ7Z6M1 372 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 FAM71AQ8IYT1 594 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 FOXJ1Q92949 421 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 RNF34Q969K3 372 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 LMLNQ96KR4 655 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 BTN2A3PQ96KV6 586 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 LHX5Q9H2C1 402 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 PDCL3Q9H2J4 239 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 DDIT4Q9NX09 232 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 TAB2Q9NYJ8 693 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 NFE2L3Q9Y4A8 694 aa16.27■□□□□ 0.2
CCDC88B-205ENST00000472524 TMEM131Q92545 1883 aa16.27■□□□□ 0.19
CCDC88B-205ENST00000472524 F5H5T6 163 aa16.26■□□□□ 0.19
CCDC88B-205ENST00000472524 H0Y626 953 aa16.26■□□□□ 0.19
CCDC88B-205ENST00000472524 ARHGAP33O14559 1287 aa16.26■□□□□ 0.19
CCDC88B-205ENST00000472524 OPHN1O60890 802 aa16.26■□□□□ 0.19
CCDC88B-205ENST00000472524 HSF2BPO75031 334 aa16.26■□□□□ 0.19
CCDC88B-205ENST00000472524 GLI1P08151 1106 aa16.26■□□□□ 0.19
CCDC88B-205ENST00000472524 CD59P13987 128 aa16.26■□□□□ 0.19
CCDC88B-205ENST00000472524 CSKP41240 450 aa16.26■□□□□ 0.19
CCDC88B-205ENST00000472524 ST8SIA6P61647 398 aa16.26■□□□□ 0.19
CCDC88B-205ENST00000472524 PLEKHG6Q3KR16 790 aa16.26■□□□□ 0.19
CCDC88B-205ENST00000472524 TCP11X2Q5H9J9 407 aa16.26■□□□□ 0.19
CCDC88B-205ENST00000472524 EFHC1Q5JVL4 640 aa16.26■□□□□ 0.19
CCDC88B-205ENST00000472524 WDR45BQ5MNZ6 344 aa16.26■□□□□ 0.19
CCDC88B-205ENST00000472524 DPY19L2P1Q6NXN4 242 aa16.26■□□□□ 0.19
CCDC88B-205ENST00000472524 CAMK1GQ96NX5 476 aa16.26■□□□□ 0.19
CCDC88B-205ENST00000472524 SLC2A13Q96QE2 648 aa16.26■□□□□ 0.19
CCDC88B-205ENST00000472524 MTG2Q9H4K7 406 aa16.26■□□□□ 0.19
CCDC88B-205ENST00000472524 PRSS16Q9NQE7 514 aa16.26■□□□□ 0.19
CCDC88B-205ENST00000472524 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.26■□□□□ 0.19
CCDC88B-205ENST00000472524 ASNSD1Q9NWL6 643 aa16.26■□□□□ 0.19
CCDC88B-205ENST00000472524 SLC12A6Q9UHW9 1150 aa16.26■□□□□ 0.19
CCDC88B-205ENST00000472524 INTS6Q9UL03 887 aaKnown RBP16.26■□□□□ 0.19
CCDC88B-205ENST00000472524 NEUROG3Q9Y4Z2 214 aa16.26■□□□□ 0.19
CCDC88B-205ENST00000472524 TMEM8BA6NDV4 472 aa16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 ASLP04424 464 aa16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 GNSP15586 552 aa16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 ABCB4P21439 1286 aa16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 EEF1GP26641 437 aaKnown RBP16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 NUMBP49757 651 aa16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 BPIFB4P59827 614 aa16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 NME3Q13232 169 aa16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 PITRM1Q5JRX3 1037 aa16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 KLHDC7AQ5VTJ3 777 aa16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 DCAF12L1Q5VU92 463 aa16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 TAF3Q5VWG9 929 aa16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 OLFML1Q6UWY5 402 aa16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 CIR1Q86X95 450 aaPredicted RBP16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 GPT2Q8TD30 523 aa16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 ZCCHC14Q8WYQ9 949 aaKnown RBP16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 TTC17Q96AE7 1141 aa16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 GBP4Q96PP9 640 aa16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 NUP58Q9BVL2 599 aa16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 MIR1-1HGQ9H1L0 117 aa16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 DNAAF2Q9NVR5 837 aaKnown RBP16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 SUSD2Q9UGT4 822 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms