RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 N4BP2L2Q92802 583 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-217ENST00000466159 FCRL3Q96P31 734 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-217ENST00000466159 FERMT1Q9BQL6 677 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 GORASP1Q9BQQ3 440 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 SYT15Q9BQS2 421 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 PAAF1Q9BRP4 392 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 RNPEPL1Q9HAU8 725 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 KCNK4Q9NYG8 393 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 KLHL8Q9P2G9 620 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-217ENST00000466159 EMCNQ9ULC0 261 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 ST3GAL5Q9UNP4 418 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 SNX10Q9Y5X0 201 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 CDY2AQ9Y6F7 541 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 ZNF236Q9UL36 1845 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 H0Y3Z8 333 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 GYG2O15488 501 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 GSC2O15499 205 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 HNRNPCL1O60812 293 aaKnown RBP9.18□□□□□ -0.94
SYNE1-217ENST00000466159 SNNO75324 88 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-217ENST00000466159 ITGA2BP08514 1039 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 CTSHP09668 335 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 ESRRAP11474 423 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-217ENST00000466159 PTPN3P26045 913 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 CNTFP26441 200 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 HOXC8P31273 242 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 CPA2P48052 419 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 AQP5P55064 265 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 FKBP1BP68106 108 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 SEMA3BQ13214 749 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 STX3Q13277 289 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 FASTKD1Q53R41 847 aaKnown RBP9.18□□□□□ -0.94
SYNE1-217ENST00000466159 PPM1JQ5JR12 505 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 N4BP2L1Q5TBK1 243 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-217ENST00000466159 DSTYKQ6XUX3 929 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 GPATCH11Q8N954 259 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 NUDCD1Q96RS6 583 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 KATNAL1Q9BW62 490 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 PRDM16Q9HAZ2 1276 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 FAM105AQ9NUU6 356 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 DDIT4Q9NX09 232 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 TAS2R1Q9NYW7 299 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 IGSF9Q9P2J2 1179 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 FBXW11Q9UKB1 542 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 MAGED2Q9UNF1 606 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-217ENST00000466159 RPS6KL1Q9Y6S9 549 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 SF3B1O75533 1304 aaKnown RBP eCLIP9.18□□□□□ -0.94
SYNE1-217ENST00000466159 E2F8A0AVK6 867 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 CASTOR2A6NHX0 329 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 BIRC5O15392 142 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 ITM2AO43736 263 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 LYPLA1O75608 230 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-217ENST00000466159 THP07101 528 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 GNAT1P11488 350 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 KCNA4P22459 653 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 CALB2P22676 271 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 ELF1P32519 619 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 TPI1P60174 286 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 RPL10AP62906 217 aaKnown RBP9.18□□□□□ -0.94
SYNE1-217ENST00000466159 PDE1BQ01064 536 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 KRT72Q14CN4 511 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 C4orf50Q6ZRC1 276 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 RASSF3Q86WH2 238 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 TREML1Q86YW5 311 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 CRLF3Q8IUI8 442 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.18□□□□□ -0.94
SYNE1-217ENST00000466159 ZNF570Q96NI8 536 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 SLC9A7Q96T83 725 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 TUBB6Q9BUF5 446 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 ZFATQ9P243 1243 aa9.18□□□□□ -0.94
SYNE1-217ENST00000466159 PPARGC1AQ9UBK2 798 aaKnown RBP9.18□□□□□ -0.94
SYNE1-217ENST00000466159 HBS1LQ9Y450 684 aaKnown RBP9.18□□□□□ -0.94
SYNE1-217ENST00000466159 HHLA1C9JL84 531 aa9.17□□□□□ -0.94
SYNE1-217ENST00000466159 ZBTB24O43167 697 aaPredicted RBP9.17□□□□□ -0.94
SYNE1-217ENST00000466159 FBXO21O94952 628 aa9.17□□□□□ -0.94
SYNE1-217ENST00000466159 LTFP02788 710 aa9.17□□□□□ -0.94
SYNE1-217ENST00000466159 POLBP06746 335 aa9.17□□□□□ -0.94
SYNE1-217ENST00000466159 C6orf222P0C671 652 aaPredicted RBP9.17□□□□□ -0.94
SYNE1-217ENST00000466159 TPBGLP0DKB5 382 aa9.17□□□□□ -0.94
SYNE1-217ENST00000466159 GNAZP19086 355 aa9.17□□□□□ -0.94
SYNE1-217ENST00000466159 LHX1P48742 406 aa9.17□□□□□ -0.94
SYNE1-217ENST00000466159 SCNN1GP51170 649 aa9.17□□□□□ -0.94
SYNE1-217ENST00000466159 MRPS6P82932 125 aaKnown RBP9.17□□□□□ -0.94
SYNE1-217ENST00000466159 KHDC1Q4VXA5 237 aaKnown RBP9.17□□□□□ -0.94
SYNE1-217ENST00000466159 RAB41Q5JT25 222 aa9.17□□□□□ -0.94
SYNE1-217ENST00000466159 WASHC2DQ5SRD0 308 aa9.17□□□□□ -0.94
SYNE1-217ENST00000466159 MBLAC2Q68D91 279 aa9.17□□□□□ -0.94
SYNE1-217ENST00000466159 KYAT3Q6YP21 454 aaKnown RBP9.17□□□□□ -0.94
SYNE1-217ENST00000466159 CCNJLQ8IV13 435 aa9.17□□□□□ -0.94
SYNE1-217ENST00000466159 PPP1R14CQ8TAE6 165 aa9.17□□□□□ -0.94
SYNE1-217ENST00000466159 NTAN1Q96AB6 310 aa9.17□□□□□ -0.94
SYNE1-217ENST00000466159 CERS2Q96G23 380 aa9.17□□□□□ -0.94
SYNE1-217ENST00000466159 ATXN7L3BQ96GX2 97 aa9.17□□□□□ -0.94
SYNE1-217ENST00000466159 EBF4Q9BQW3 602 aa9.17□□□□□ -0.94
SYNE1-217ENST00000466159 CNGB3Q9NQW8 809 aa9.17□□□□□ -0.94
SYNE1-217ENST00000466159 SLC38A7Q9NVC3 462 aa9.17□□□□□ -0.94
SYNE1-217ENST00000466159 ARL5CA6NH57 179 aa9.17□□□□□ -0.94
SYNE1-217ENST00000466159 CAPN14A8MX76 684 aa9.17□□□□□ -0.94
SYNE1-217ENST00000466159 PRKCGP05129 697 aa9.17□□□□□ -0.94
SYNE1-217ENST00000466159 ENO1P06733 434 aaKnown RBP9.17□□□□□ -0.94
SYNE1-217ENST00000466159 FAM163BP0C2L3 166 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms