RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 ACAT2Q9BWD1 397 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 RUBCNLQ9H714 662 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 SMYD3Q9H7B4 428 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 SP140LQ9H930 580 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 APPL1Q9UKG1 709 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 DUSP10Q9Y6W6 482 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 DAB1O75553 588 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 ARIH2O95376 493 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 ALOX5P09917 674 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 COL6A1P12109 1028 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 ABCB4P21439 1286 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 ENTPD1P49961 510 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 GPC5P78333 572 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 CREMQ03060 361 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 SNX17Q15036 470 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 CNGA2Q16280 664 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 CCDC14Q49A88 953 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 IYDQ6PHW0 289 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 CDR2LQ86X02 465 aaPredicted RBP10.05□□□□□ -0.8
USP54-205ENST00000424265 TMEM86AQ8N2M4 240 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 ANKLE1Q8NAG6 615 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 RASSF5Q8WWW0 418 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 ZNF518BQ9C0D4 1074 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 KCTD10Q9H3F6 313 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 TRIM39Q9HCM9 518 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 DICER1Q9UPY3 1922 aaKnown RBP10.05□□□□□ -0.8
USP54-205ENST00000424265 ASTN1O14525 1302 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 IQANK1A0A1B0GTG1 560 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 TMEM150BA6NC51 233 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 MIF4GDA9UHW6 222 aaKnown RBP10.05□□□□□ -0.8
USP54-205ENST00000424265 FAM228BP0C875 321 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 CST5P28325 142 aaPredicted RBP10.05□□□□□ -0.8
USP54-205ENST00000424265 MAN1A1P33908 653 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 SLC5A3P53794 718 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 KCNJ8Q15842 424 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 ANKRD20A4Q4UJ75 823 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 ZNF598Q86UK7 904 aaKnown RBP10.05□□□□□ -0.8
USP54-205ENST00000424265 TRIB2Q92519 343 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 PMEPA1Q969W9 287 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 AGPAT1Q99943 283 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 LACRTQ9GZZ8 138 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 TRPV6Q9H1D0 765 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 PTCH2Q9Y6C5 1203 aa10.05□□□□□ -0.8
USP54-205ENST00000424265 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.04□□□□□ -0.8
USP54-205ENST00000424265 K7EPI3 171 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 CLASP2O75122 1294 aaKnown RBP10.04□□□□□ -0.8
USP54-205ENST00000424265 SIN3BO75182 1162 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 RCVRNP35243 200 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 OASLQ15646 514 aaKnown RBP10.04□□□□□ -0.8
USP54-205ENST00000424265 EPM2AIP1Q7L775 607 aaPredicted RBP10.04□□□□□ -0.8
USP54-205ENST00000424265 TMC3Q7Z5M5 1100 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 AFAP1L2Q8N4X5 818 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 SLC22A8Q8TCC7 542 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 CYLDQ9NQC7 956 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 TXNDC16Q9P2K2 825 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 STAP1Q9ULZ2 295 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 TYW5A2RUC4 315 aaKnown RBP10.04□□□□□ -0.8
USP54-205ENST00000424265 FKBP6O75344 327 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 PALMO75781 387 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 ITGB3P05106 788 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 CAND1Q86VP6 1230 aaKnown RBP10.04□□□□□ -0.8
USP54-205ENST00000424265 C7orf57Q8NEG2 295 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 RNF139Q8WU17 664 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 TMEM169Q96HH4 297 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 CPB2Q96IY4 423 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 ZFYVE19Q96K21 471 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 CDT1Q9H211 546 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 RAD21L1Q9H4I0 556 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 CAPN6Q9Y6Q1 641 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 TBX10O75333 385 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 SOX10P56693 466 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 SP2Q02086 613 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 PPIGQ13427 754 aaKnown RBP eCLIP10.04□□□□□ -0.8
USP54-205ENST00000424265 LSMEM1Q8N8F7 131 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 HDAC2Q92769 488 aaKnown RBP10.04□□□□□ -0.8
USP54-205ENST00000424265 SLC35C1Q96A29 364 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 LRGUKQ96M69 825 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 CFHR5Q9BXR6 569 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 UCKL1Q9NWZ5 548 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 KLHL3Q9UH77 587 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 GABRQQ9UN88 632 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 DTNAQ9Y4J8 743 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 FOXD2O60548 495 aaPredicted RBP10.04□□□□□ -0.8
USP54-205ENST00000424265 ARHGEF15O94989 841 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 PFKMP08237 780 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 FAM58BPP0C7Q3 252 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 SRGAP2BP0DMP2 458 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 GJC1P36383 396 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 EFTUD2Q15029 972 aaKnown RBP eCLIP10.04□□□□□ -0.8
USP54-205ENST00000424265 KLHL38Q2WGJ6 581 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 FBXO47Q5MNV8 452 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 OR6B2Q6IFH4 312 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 LRRC55Q6ZSA7 311 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 AKAP14Q86UN6 197 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 SPATA2LQ8IUW3 424 aaPredicted RBP10.04□□□□□ -0.8
USP54-205ENST00000424265 CDC26Q8NHZ8 85 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 MFSD14AQ96MC6 490 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 MTMR12Q9C0I1 747 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 ADNPQ9H2P0 1102 aa10.04□□□□□ -0.8
USP54-205ENST00000424265 C11orf49Q9H6J7 331 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms