RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 PAPPA2Q9BXP8 1791 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 COL11A1P12107 1806 aaPredicted RBP4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 SYCE3A1L190 88 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 WDR27A2RRH5 827 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 BTBD18B2RXH4 712 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 UBE2Q2LH0YL09 131 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 PPM1DO15297 605 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 KINO60870 393 aaKnown RBP4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 PPP6R2O75170 966 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 BMP15O95972 392 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 U2AF2P26368 475 aaKnown RBP eCLIP4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 GNA11P29992 359 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 SLC1A4P43007 532 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 NOVP48745 357 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 SOX10P56693 466 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 ZNF543Q08ER8 600 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 BMPR2Q13873 1038 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 ZRSR1Q15695 479 aaKnown RBP4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 TMEM240Q5SV17 173 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 FAM160B1Q5W0V3 765 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 FCRLBQ6BAA4 426 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 GALNT17Q6IS24 598 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 TATDN1Q6P1N9 297 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 PIK3AP1Q6ZUJ8 805 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 CCAR1Q8IX12 1150 aaKnown RBP4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 SRRM1Q8IYB3 904 aaKnown RBP4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 GRAMD1CQ8IYS0 662 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 BLIDQ8IZY5 108 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 GPC2Q8N158 579 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 PRR18Q8N4B5 295 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 BRIX1Q8TDN6 353 aaKnown RBP4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 HASPINQ8TF76 798 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 ATRIPQ8WXE1 791 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 ANP32BQ92688 251 aaKnown RBP4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 RFKQ969G6 155 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 MVB12AQ96EY5 273 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 SLC35A4Q96G79 324 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 FAM167AQ96KS9 214 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 SLC46A1Q96NT5 459 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 PIGSQ96S52 555 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 SYT17Q9BSW7 474 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 GTPBP4Q9BZE4 634 aaKnown RBP4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 TMEM39BQ9GZU3 492 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 CPVLQ9H3G5 476 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 TSPY26PQ9H489 355 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 VAT1LQ9HCJ6 419 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 GGA3Q9NZ52 723 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 CPA4Q9UI42 421 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 HACL1Q9UJ83 578 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 ADAM21Q9UKJ8 722 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 PCDHA6Q9UN73 950 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 CLIC4Q9Y696 253 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 MYH7BA7E2Y1 1941 aa4.23□□□□□ -1.73
HMGB3P20-201ENST00000417997 LOC285556D6RIA3 1793 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 SMCO2A6NFE2 343 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 CYTH3O43739 400 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 NXPH3O95157 252 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 NDUFB10O96000 172 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 HNRNPCP07910 306 aaKnown RBP eCLIP4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 ASNSP08243 561 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 SNHG28P0DPA3 235 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 PF4V1P10720 104 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 PIM1P11309 404 aaPredicted RBP4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 HDCP19113 662 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 DRD4P21917 467 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 ITPKBP27987 946 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 MARCKSP29966 332 aaPredicted RBP4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 ALDH9A1P49189 494 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 TRAF1Q13077 416 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 BOP1Q14137 746 aaKnown RBP4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 PLS1Q14651 629 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 NONOQ15233 471 aaKnown RBP eCLIP4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 GPR162Q16538 588 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 CDC37Q16543 378 aaPredicted RBP4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 SRSF7Q16629 238 aaKnown RBP eCLIP4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 SHROOM1Q2M3G4 852 aaPredicted RBP4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 KHDC1LQ5JSQ8 128 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 ADALQ6DHV7 355 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 SUMO4Q6EEV6 95 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 ZNF551Q7Z340 670 aaPredicted RBP4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 PPP1R32Q7Z5V6 425 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 LINC00301Q8NCQ3 95 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 GMCL1P1Q8NEA9 526 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 RASSF8Q8NHQ8 419 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 CUL5Q93034 780 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 MTFMTQ96DP5 389 aaKnown RBP4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 CCDC34Q96HJ3 373 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 ZBED3Q96IU2 234 aaPredicted RBP4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 UBA5Q9GZZ9 404 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 CLSTN2Q9H4D0 955 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 GRPEL1Q9HAV7 217 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 AS3MTQ9HBK9 375 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 SARS2Q9NP81 518 aaKnown RBP4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 ARHGEF3Q9NR81 526 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 BARHL2Q9NY43 387 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 DACT1Q9NYF0 836 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 SH3BP4Q9P0V3 963 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 RNF7Q9UBF6 113 aa4.22□□□□□ -1.73
HMGB3P20-201ENST00000417997 HOOK1Q9UJC3 728 aaKnown RBP4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms