RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 PRKAR1AP10644 381 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 SP100P23497 879 aaPredicted RBP12.08□□□□□ -0.48
SYNPO-202ENST00000394243 POU6F1Q14863 301 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 SEZ6Q53EL9 994 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 ARPINQ7Z6K5 226 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 KCNMB4Q86W47 210 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 ZCCHC9Q8N567 271 aaKnown RBP12.08□□□□□ -0.48
SYNPO-202ENST00000394243 PIWIL2Q8TC59 973 aaKnown RBP12.08□□□□□ -0.48
SYNPO-202ENST00000394243 PIGBQ92521 554 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 SLITRK2Q9H156 845 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 GANQ9H2C0 597 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 VPS45Q9NRW7 570 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 USP6P35125 1406 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 UBE2QL1A1L167 161 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 RCVRNP35243 200 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 HALP42357 657 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 PSMD4P55036 377 aaKnown RBP12.08□□□□□ -0.48
SYNPO-202ENST00000394243 CBWD2Q8IUF1 395 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 ACTR8Q9H981 624 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 SLC9A8Q9Y2E8 581 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 CARD8Q9Y2G2 431 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 PCDHA3Q9Y5H8 950 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 LOC110117498-PIK3R3F6TDL0 507 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 PSMD12O00232 456 aaPredicted RBP12.08□□□□□ -0.48
SYNPO-202ENST00000394243 CD4P01730 458 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 RXRGP48443 463 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 CDK7P50613 346 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 ACLYP53396 1101 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 PRKCEQ02156 737 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 KATNAL1Q9BW62 490 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 ARMC7Q9H6L4 198 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 KCND1Q9NSA2 647 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 KBTBD4Q9NVX7 518 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 RPS6KB2Q9UBS0 482 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 DNPEPQ9ULA0 475 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 PRDM15P57071 1507 aaPredicted RBP12.08□□□□□ -0.48
SYNPO-202ENST00000394243 DDX3XO00571 662 aaKnown RBP eCLIP12.08□□□□□ -0.48
SYNPO-202ENST00000394243 OR6B1O95007 311 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 NUMBP49757 651 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 RPL14P50914 215 aaKnown RBP12.08□□□□□ -0.48
SYNPO-202ENST00000394243 SPP2Q13103 211 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 AMHR2Q16671 573 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 PAGE2Q7Z2X7 111 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 ETNPPLQ8TBG4 499 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 CELF1Q92879 486 aaKnown RBP12.08□□□□□ -0.48
SYNPO-202ENST00000394243 CEP41Q9BYV8 373 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 ARHGEF40Q8TER5 1519 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 CCNT2O60583 730 aaKnown RBP12.08□□□□□ -0.48
SYNPO-202ENST00000394243 PSIP1O75475 530 aaKnown RBP12.08□□□□□ -0.48
SYNPO-202ENST00000394243 TPH1P17752 444 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 CD151P48509 253 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 FNBP1LQ5T0N5 605 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 ZNF544Q6NX49 715 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 CLEC10AQ8IUN9 316 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 NMRAL1Q9HBL8 299 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 TRMUO75648 421 aaKnown RBP12.07□□□□□ -0.48
SYNPO-202ENST00000394243 PRLP01236 227 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 JCHAINP01591 159 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 MYLPFQ96A32 169 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 DNAJC18Q9H819 358 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 PTGS2P35354 604 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 SEPHS1P49903 392 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 SV2CQ496J9 727 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 ERICH5Q6P6B1 374 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 ALYREFQ86V81 257 aaKnown RBP12.07□□□□□ -0.48
SYNPO-202ENST00000394243 MMP19Q99542 508 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 MIEF1Q9NQG6 463 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 USP21Q9UK80 565 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 ANKRD6Q9Y2G4 727 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 SEC22BO75396 215 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 CYP2C8P10632 490 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 CYP2F1P24903 491 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 PRKCQQ04759 706 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 MAD2L1Q13257 205 aaPredicted RBP12.07□□□□□ -0.48
SYNPO-202ENST00000394243 NCAPD2Q15021 1401 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 PDK4Q16654 411 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 PAGE2BQ5JRK9 111 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 ARHGAP36Q6ZRI8 547 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 POLNQ7Z5Q5 900 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 CDK20Q8IZL9 346 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 FBXO39Q8N4B4 442 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 ERLEC1Q96DZ1 483 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 CLPBQ9H078 707 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 AP4E1Q9UPM8 1137 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 KDM6BO15054 1643 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 MAGEB2O15479 319 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 CRABP2P29373 138 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 YWHAZP63104 245 aaKnown RBP12.07□□□□□ -0.48
SYNPO-202ENST00000394243 TYSND1Q2T9J0 566 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 LIN52Q52LA3 116 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 LDLRAP1Q5SW96 308 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 EIF1ADQ8N9N8 165 aaKnown RBP12.07□□□□□ -0.48
SYNPO-202ENST00000394243 MCFD2Q8NI22 146 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 TMC2Q8TDI7 906 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 MYDGFQ969H8 173 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 NSUN4Q96CB9 384 aaKnown RBP12.07□□□□□ -0.48
SYNPO-202ENST00000394243 FAM84BQ96KN1 310 aaPredicted RBP12.07□□□□□ -0.48
SYNPO-202ENST00000394243 PFDN2Q9UHV9 154 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 DGKBQ9Y6T7 804 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 RGSL1A5PLK6 1076 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms