RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 FAM81AQ8TBF8 368 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 MAGEB10Q96LZ2 347 aaPredicted RBP11.87□□□□□ -0.51
VPS13A-205ENST00000376636 TRIM2Q9C040 744 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 H7C4K7 107 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 ARFIP1P53367 373 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 NAA20P61599 178 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 GRTP1Q5TC63 336 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 HERC6Q8IVU3 1022 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 NECTIN3Q9NQS3 549 aa11.87□□□□□ -0.51
VPS13A-205ENST00000376636 PSIP1O75475 530 aaKnown RBP11.86□□□□□ -0.51
VPS13A-205ENST00000376636 SLC25A12O75746 678 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 RNF44Q7L0R7 432 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 ACOT12Q8WYK0 555 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 CPNE1Q99829 537 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 CYP4F12Q9HCS2 524 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 GGA3Q9NZ52 723 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 RAPGEFL1Q9UHV5 662 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 HSD3B2P26439 372 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 NEK3P51956 506 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 TCEA2Q15560 299 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 OR56A4Q8NGH8 313 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 MKNK1Q9BUB5 465 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 GIT1Q9Y2X7 761 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 ZBTB22O15209 634 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 ETS1P14921 441 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 RENBPP51606 427 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 MCCD1P59942 119 aaPredicted RBP11.86□□□□□ -0.51
VPS13A-205ENST00000376636 MYBPC3Q14896 1274 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 ACOX2Q99424 681 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 SLC25A23Q9BV35 468 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 ST3GAL5Q9UNP4 418 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 SERPINE1P05121 402 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 CDK7P50613 346 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 EPHA7Q15375 998 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 SH3RF3Q8TEJ3 882 aaPredicted RBP11.86□□□□□ -0.51
VPS13A-205ENST00000376636 ITIH1P19827 911 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 USF2Q15853 346 aaPredicted RBP11.86□□□□□ -0.51
VPS13A-205ENST00000376636 QRFPRQ96P65 431 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 ATP7BP35670 1465 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 KRT33AO76009 404 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 NR2C2P49116 596 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 STARD3Q14849 445 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 BRINP3Q76B58 766 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 SPAG16Q8N0X2 631 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 CHP1Q99653 195 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 ZSWIM1Q9BR11 485 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 C1QTNF7Q9BXJ2 289 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 SLC35C2Q9NQQ7 365 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.86□□□□□ -0.516e-8■■■■□ 23.2
VPS13A-205ENST00000376636 IKZF3Q9UKT9 509 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 ITGA4P13612 1032 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 RPL3P39023 403 aaKnown RBP11.86□□□□□ -0.51
VPS13A-205ENST00000376636 ALDH7A1P49419 539 aaKnown RBP11.86□□□□□ -0.51
VPS13A-205ENST00000376636 GRAPQ13588 217 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 GRAPLQ8TC17 118 aaPredicted RBP11.86□□□□□ -0.51
VPS13A-205ENST00000376636 MCOLN3Q8TDD5 553 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 CITED4Q96RK1 184 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 TDRD1Q9BXT4 1180 aaKnown RBP11.86□□□□□ -0.51
VPS13A-205ENST00000376636 LOC110117498-PIK3R3F6TDL0 507 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 MPP2Q14168 576 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 C4orf46Q504U0 113 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 PAGE2BQ5JRK9 111 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 NMRAL1Q9HBL8 299 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 GNPTGQ9UJJ9 305 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 NUP50Q9UKX7 468 aa11.86□□□□□ -0.51
VPS13A-205ENST00000376636 AXIN1O15169 862 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 ERFEQ4G0M1 354 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 FBXO39Q8N4B4 442 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 CCNB1IP1Q9NPC3 277 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 SGTAO43765 313 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 ADSSP30520 456 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 PLEKHG4BQ96PX9 1271 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 CST11Q9H112 138 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 DSEQ9UL01 958 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 TBC1D24Q9ULP9 559 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 WRBO00258 174 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 SEC22BO75396 215 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 NTSP30990 170 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 CLK3P49761 638 aaKnown RBP11.85□□□□□ -0.51
VPS13A-205ENST00000376636 TOMM20Q15388 145 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 ARMC8Q8IUR7 673 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 KBTBD2Q8IY47 623 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 SNIP1Q8TAD8 396 aaKnown RBP11.85□□□□□ -0.51
VPS13A-205ENST00000376636 OSGEPL1Q9H4B0 414 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 IFNA6P05013 189 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 NR1H2P55055 460 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 ATF7IP2Q5U623 682 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 TMBIM4Q9HC24 238 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 PRMT7Q9NVM4 692 aaPredicted RBP11.85□□□□□ -0.51
VPS13A-205ENST00000376636 CNOT7Q9UIV1 285 aaKnown RBP11.85□□□□□ -0.51
VPS13A-205ENST00000376636 USP18Q9UMW8 372 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 SORCS3Q9UPU3 1222 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 RB1P06400 928 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 IDH2P48735 452 aaKnown RBP11.85□□□□□ -0.51
VPS13A-205ENST00000376636 MFSD7Q6UXD7 560 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 HIPK1Q86Z02 1210 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 EMC1Q8N766 993 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 NEK7Q8TDX7 302 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 STK32AQ8WU08 396 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 OSBPL11Q9BXB4 747 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms