RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 PCDHB1Q9Y5F3 818 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 A0A1W2PP55 124 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 LRRC72A6NJI9 287 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 KLK10O43240 276 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 ATP8B1O43520 1251 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 STX6O43752 255 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 EXOC3O60645 756 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 RNASEH1O60930 286 aaKnown RBP11.67□□□□□ -0.54
RTN3-204ENST00000354497 RNASEH2AO75792 299 aaKnown RBP11.67□□□□□ -0.54
RTN3-204ENST00000354497 MBD3O95983 291 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 MT-CO3P00414 261 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 MPOP05164 745 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 HLA-FP30511 346 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 ASIC1P78348 528 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 DAB2P98082 770 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 ILKQ13418 452 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 BMT2Q1RMZ1 405 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 SLC45A4Q5BKX6 768 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 MBLAC2Q68D91 279 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 DHX40Q8IX18 779 aaKnown RBP11.67□□□□□ -0.54
RTN3-204ENST00000354497 CPXM2Q8N436 756 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 CYFIP2Q96F07 1278 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 WBP1Q96G27 269 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 SERAC1Q96JX3 654 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 OMDQ99983 421 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 TRIM4Q9C037 500 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 PABPC3Q9H361 631 aaKnown RBP11.67□□□□□ -0.54
RTN3-204ENST00000354497 DEF6Q9H4E7 631 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 CXorf56Q9H5V9 222 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 VRTNQ9H8Y1 702 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 EBF2Q9HAK2 575 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 PSD3Q9NYI0 1048 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 MARCH2Q9P0N8 246 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 SUN2Q9UH99 717 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 ADAMTS1Q9UHI8 967 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 GGA2Q9UJY4 613 aa11.67□□□□□ -0.54
RTN3-204ENST00000354497 PLXNA2O75051 1894 aa11.66□□□□□ -0.54
RTN3-204ENST00000354497 CKAP5Q14008 2032 aa11.66□□□□□ -0.54
RTN3-204ENST00000354497 A0A087X0B3 334 aa11.66□□□□□ -0.54
RTN3-204ENST00000354497 VPS37CA5D8V6 355 aaPredicted RBP11.66□□□□□ -0.54
RTN3-204ENST00000354497 LRRIQ3A6PVS8 624 aaPredicted RBP11.66□□□□□ -0.54
RTN3-204ENST00000354497 WNT9AO14904 365 aa11.66□□□□□ -0.54
RTN3-204ENST00000354497 EIF3DO15371 548 aaKnown RBP eCLIP11.66□□□□□ -0.54
RTN3-204ENST00000354497 TGFB1I1O43294 461 aa11.66□□□□□ -0.54
RTN3-204ENST00000354497 SDC3O75056 442 aa11.66□□□□□ -0.54
RTN3-204ENST00000354497 POLR2EP19388 210 aaKnown RBP11.66□□□□□ -0.54
RTN3-204ENST00000354497 HOXD9P28356 352 aaPredicted RBP11.66□□□□□ -0.54
RTN3-204ENST00000354497 KIF11P52732 1056 aa11.66□□□□□ -0.54
RTN3-204ENST00000354497 GALCP54803 685 aa11.66□□□□□ -0.54
RTN3-204ENST00000354497 GABREP78334 506 aa11.66□□□□□ -0.54
RTN3-204ENST00000354497 PKDCCQ504Y2 493 aa11.66□□□□□ -0.54
RTN3-204ENST00000354497 TEX35Q5T0J7 233 aa11.66□□□□□ -0.54
RTN3-204ENST00000354497 SPOPLQ6IQ16 392 aa11.66□□□□□ -0.54
RTN3-204ENST00000354497 CCDC186Q7Z3E2 898 aa11.66□□□□□ -0.54
RTN3-204ENST00000354497 UNC93AQ86WB7 457 aa11.66□□□□□ -0.54
RTN3-204ENST00000354497 LURAP1LQ8IV03 231 aa11.66□□□□□ -0.54
RTN3-204ENST00000354497 AHI1Q8N157 1196 aa11.66□□□□□ -0.54
RTN3-204ENST00000354497 CRYBG2Q8N1P7 616 aa11.66□□□□□ -0.54
RTN3-204ENST00000354497 DCBLD1Q8N8Z6 715 aa11.66□□□□□ -0.54
RTN3-204ENST00000354497 PLEKHO2Q8TD55 490 aa11.66□□□□□ -0.54
RTN3-204ENST00000354497 TWNKQ96RR1 684 aa11.66□□□□□ -0.54
RTN3-204ENST00000354497 HNRNPABQ99729 332 aaKnown RBP11.66□□□□□ -0.54
RTN3-204ENST00000354497 CLIC5Q9NZA1 410 aa11.66□□□□□ -0.54
RTN3-204ENST00000354497 SERGEFQ9UGK8 458 aa11.66□□□□□ -0.54
RTN3-204ENST00000354497 SRPRBQ9Y5M8 271 aaKnown RBP11.66□□□□□ -0.54
RTN3-204ENST00000354497 HEMK1Q9Y5R4 338 aaPredicted RBP11.66□□□□□ -0.54
RTN3-204ENST00000354497 ANKRD33BA6NCL7 494 aa11.65□□□□□ -0.54
RTN3-204ENST00000354497 TLR4O00206 839 aa11.65□□□□□ -0.54
RTN3-204ENST00000354497 MID1O15344 667 aa11.65□□□□□ -0.54
RTN3-204ENST00000354497 VNN1O95497 513 aa11.65□□□□□ -0.54
RTN3-204ENST00000354497 CPP00450 1065 aa11.65□□□□□ -0.54
RTN3-204ENST00000354497 ATP5BP06576 529 aaKnown RBP11.65□□□□□ -0.54
RTN3-204ENST00000354497 DLDP09622 509 aaKnown RBP11.65□□□□□ -0.54
RTN3-204ENST00000354497 PABPC1P11940 636 aaKnown RBP11.65□□□□□ -0.54
RTN3-204ENST00000354497 NXPH1P58417 271 aa11.65□□□□□ -0.54
RTN3-204ENST00000354497 ST8SIA6P61647 398 aa11.65□□□□□ -0.54
RTN3-204ENST00000354497 EHHADHQ08426 723 aa11.65□□□□□ -0.54
RTN3-204ENST00000354497 SFSWAPQ12872 951 aaKnown RBP11.65□□□□□ -0.54
RTN3-204ENST00000354497 E2F4Q16254 413 aa11.65□□□□□ -0.54
RTN3-204ENST00000354497 FAM26FQ5R3K3 315 aa11.65□□□□□ -0.54
RTN3-204ENST00000354497 USP30Q70CQ3 517 aa11.65□□□□□ -0.54
RTN3-204ENST00000354497 ADIPOR2Q86V24 386 aa11.65□□□□□ -0.54
RTN3-204ENST00000354497 OR2T34Q8NGX1 318 aa11.65□□□□□ -0.54
RTN3-204ENST00000354497 KIAA1524Q8TCG1 905 aa11.65□□□□□ -0.54
RTN3-204ENST00000354497 ZNF507Q8TCN5 953 aa11.65□□□□□ -0.54
RTN3-204ENST00000354497 PLD4Q96BZ4 506 aa11.65□□□□□ -0.54
RTN3-204ENST00000354497 TMX3Q96JJ7 454 aa11.65□□□□□ -0.54
RTN3-204ENST00000354497 ZNF578Q96N58 590 aaPredicted RBP11.65□□□□□ -0.54
RTN3-204ENST00000354497 NEUROG2Q9H2A3 272 aa11.65□□□□□ -0.54
RTN3-204ENST00000354497 USP25Q9UHP3 1055 aa11.65□□□□□ -0.54
RTN3-204ENST00000354497 MYO18BQ8IUG5 2567 aa11.65□□□□□ -0.54
RTN3-204ENST00000354497 TP53BP1Q12888 1972 aaPredicted RBP11.64□□□□□ -0.55
RTN3-204ENST00000354497 NUMA1Q14980 2115 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 PTPRQQ9UMZ3 2332 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 A0A1W2PR77 199 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 MYO1CO00159 1063 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 SIN3BO75182 1162 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 USP12O75317 370 aa11.64□□□□□ -0.55
RTN3-204ENST00000354497 C4BPAP04003 597 aaKnown RBP11.64□□□□□ -0.55
RTN3-204ENST00000354497 CD58P19256 250 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms