RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 ZNF569Q5MCW4 686 aa22.86■■□□□ 1.25
SDC3-202ENST00000339394 RWDD4Q6NW29 188 aaKnown RBP22.86■■□□□ 1.25
SDC3-202ENST00000339394 CIR1Q86X95 450 aaPredicted RBP22.86■■□□□ 1.25
SDC3-202ENST00000339394 HES6Q96HZ4 224 aa22.86■■□□□ 1.25
SDC3-202ENST00000339394 ZYG11BQ9C0D3 744 aa22.86■■□□□ 1.25
SDC3-202ENST00000339394 DDX56Q9NY93 547 aaKnown RBP22.86■■□□□ 1.25
SDC3-202ENST00000339394 CWC15Q9P013 229 aaKnown RBP22.86■■□□□ 1.25
SDC3-202ENST00000339394 MIF4GDA9UHW6 222 aaKnown RBP22.85■■□□□ 1.25
SDC3-202ENST00000339394 EEF2KO00418 725 aaKnown RBP22.85■■□□□ 1.25
SDC3-202ENST00000339394 CNTN5O94779 1100 aa22.85■■□□□ 1.25
SDC3-202ENST00000339394 KDELR1P24390 212 aa22.85■■□□□ 1.25
SDC3-202ENST00000339394 IL4RP24394 825 aa22.85■■□□□ 1.25
SDC3-202ENST00000339394 EPHB2P29323 1055 aa22.85■■□□□ 1.25
SDC3-202ENST00000339394 HOXC13P31276 330 aa22.85■■□□□ 1.25
SDC3-202ENST00000339394 PEX5P50542 639 aa22.85■■□□□ 1.25
SDC3-202ENST00000339394 TPI1P60174 286 aa22.85■■□□□ 1.25
SDC3-202ENST00000339394 PDK2Q15119 407 aa22.85■■□□□ 1.25
SDC3-202ENST00000339394 GAB4Q2WGN9 574 aa22.85■■□□□ 1.25
SDC3-202ENST00000339394 MEI1Q5TIA1 1274 aa22.85■■□□□ 1.25
SDC3-202ENST00000339394 TTC39BQ5VTQ0 682 aaPredicted RBP22.85■■□□□ 1.25
SDC3-202ENST00000339394 MAP7D3Q8IWC1 876 aa22.85■■□□□ 1.25
SDC3-202ENST00000339394 NAT16Q8N8M0 369 aa22.85■■□□□ 1.25
SDC3-202ENST00000339394 TBC1D31Q96DN5 1066 aa22.85■■□□□ 1.25
SDC3-202ENST00000339394 UHRF1Q96T88 793 aaPredicted RBP22.85■■□□□ 1.25
SDC3-202ENST00000339394 HEBP1Q9NRV9 189 aa22.85■■□□□ 1.25
SDC3-202ENST00000339394 MUTYHQ9UIF7 546 aa22.85■■□□□ 1.25
SDC3-202ENST00000339394 PI4K2BG5E9Z4 385 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 HTR7P34969 479 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 SOX9P48436 509 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 ZNF135P52742 658 aaPredicted RBP22.84■■□□□ 1.25
SDC3-202ENST00000339394 DPYSL3Q14195 570 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 IER5LQ5T953 404 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 RNF43Q68DV7 783 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 RFX8Q6ZV50 586 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 KATNAL2Q8IYT4 538 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 UBE2Q2Q8WVN8 375 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 TSC1Q92574 1164 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 ALG3Q92685 438 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 CHFRQ96EP1 664 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 CALN1Q9BXU9 219 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 CLEC4EQ9ULY5 219 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 A0A1B0GVM2 712 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 LRRD1A4D1F6 860 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 TCAF2A6NFQ2 919 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 C3orf70A6NLC5 250 aaPredicted RBP22.84■■□□□ 1.25
SDC3-202ENST00000339394 DDX3YO15523 660 aaKnown RBP22.84■■□□□ 1.25
SDC3-202ENST00000339394 KRT1P04264 644 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 ARL4AP40617 200 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 HCAR3P49019 387 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 CDH4P55283 916 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 MMRN1Q13201 1228 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 ODF2Q5BJF6 829 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 C12orf40Q86WS4 652 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 SLC35F6Q8N357 371 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 UBL4BQ8N7F7 174 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 RNF25Q96BH1 459 aaPredicted RBP22.84■■□□□ 1.25
SDC3-202ENST00000339394 CSPG4P5Q96PW8 444 aa22.84■■□□□ 1.25
SDC3-202ENST00000339394 DAPK3O43293 454 aa22.83■■□□□ 1.25
SDC3-202ENST00000339394 CACNG3O60359 315 aa22.83■■□□□ 1.25
SDC3-202ENST00000339394 CLDN11O75508 207 aa22.83■■□□□ 1.25
SDC3-202ENST00000339394 ZRANB2O95218 330 aaKnown RBP eCLIP22.83■■□□□ 1.254e-8■■■■■ 36.4
SDC3-202ENST00000339394 RHOQP17081 205 aa22.83■■□□□ 1.25
SDC3-202ENST00000339394 DNA2P51530 1060 aa22.83■■□□□ 1.25
SDC3-202ENST00000339394 RWDD2BP57060 319 aa22.83■■□□□ 1.25
SDC3-202ENST00000339394 SLC44A4Q53GD3 710 aa22.83■■□□□ 1.25
SDC3-202ENST00000339394 CHST9Q7L1S5 443 aa22.83■■□□□ 1.25
SDC3-202ENST00000339394 TFAP2DQ7Z6R9 452 aa22.83■■□□□ 1.25
SDC3-202ENST00000339394 NLRP14Q86W24 1093 aa22.83■■□□□ 1.25
SDC3-202ENST00000339394 ETFBKMTQ8IXQ9 262 aa22.83■■□□□ 1.25
SDC3-202ENST00000339394 UBALD2Q8IYN6 164 aa22.83■■□□□ 1.25
SDC3-202ENST00000339394 XPO6Q96QU8 1125 aaKnown RBP22.83■■□□□ 1.25
SDC3-202ENST00000339394 ZNF670Q9BS34 389 aa22.83■■□□□ 1.25
SDC3-202ENST00000339394 RCOR3Q9P2K3 495 aaPredicted RBP22.83■■□□□ 1.25
SDC3-202ENST00000339394 JRKLQ9Y4A0 524 aa22.83■■□□□ 1.25
SDC3-202ENST00000339394 PIAS3Q9Y6X2 628 aa22.83■■□□□ 1.25
SDC3-202ENST00000339394 KIF26AQ9ULI4 1882 aaPredicted RBP22.83■■□□□ 1.24
SDC3-202ENST00000339394 MYO10Q9HD67 2058 aa22.83■■□□□ 1.24
SDC3-202ENST00000339394 H3BRJ5 948 aa22.82■■□□□ 1.24
SDC3-202ENST00000339394 LUC7L3O95232 432 aaKnown RBP22.82■■□□□ 1.24
SDC3-202ENST00000339394 MSNP26038 577 aaKnown RBP22.82■■□□□ 1.24
SDC3-202ENST00000339394 DEKP35659 375 aaKnown RBP22.82■■□□□ 1.24
SDC3-202ENST00000339394 SLC6A11P48066 632 aa22.82■■□□□ 1.24
SDC3-202ENST00000339394 GNG11P61952 73 aa22.82■■□□□ 1.24
SDC3-202ENST00000339394 DPYSQ14117 519 aa22.82■■□□□ 1.24
SDC3-202ENST00000339394 RPS6KA1Q15418 735 aa22.82■■□□□ 1.24
SDC3-202ENST00000339394 MFSD7Q6UXD7 560 aa22.82■■□□□ 1.24
SDC3-202ENST00000339394 ANKS1BQ7Z6G8 1248 aa22.82■■□□□ 1.24
SDC3-202ENST00000339394 MFN1Q8IWA4 741 aa22.82■■□□□ 1.24
SDC3-202ENST00000339394 RCOR2Q8IZ40 523 aa22.82■■□□□ 1.24
SDC3-202ENST00000339394 CARNMT1Q8N4J0 409 aa22.82■■□□□ 1.24
SDC3-202ENST00000339394 EXD1Q8NHP7 514 aa22.82■■□□□ 1.24
SDC3-202ENST00000339394 TLR10Q9BXR5 811 aa22.82■■□□□ 1.24
SDC3-202ENST00000339394 CATSPERBQ9H7T0 1116 aa22.82■■□□□ 1.24
SDC3-202ENST00000339394 ZNF212Q9UDV6 495 aa22.82■■□□□ 1.24
SDC3-202ENST00000339394 FBXO10Q9UK96 956 aa22.82■■□□□ 1.24
SDC3-202ENST00000339394 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP22.81■■□□□ 1.24
SDC3-202ENST00000339394 SPECC1L-ADORA2AF8WAN1 911 aa22.81■■□□□ 1.24
SDC3-202ENST00000339394 H0Y626 953 aa22.81■■□□□ 1.24
SDC3-202ENST00000339394 ENC1O14682 589 aa22.81■■□□□ 1.24
SDC3-202ENST00000339394 FGF10O15520 208 aaPredicted RBP22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms