RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 C12orf43Q96C57 262 aaKnown RBP13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 PPP1R10Q96QC0 940 aaKnown RBP13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 XPNPEP3Q9NQH7 507 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 MKS1Q9NXB0 559 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 EFR3BQ9Y2G0 817 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 COQ6Q9Y2Z9 468 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 TESPA1A2RU30 521 aaPredicted RBP13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 J3QRK9 145 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 ATE1O95260 518 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 ATP5BP06576 529 aaKnown RBP13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 CHRNGP07510 517 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 ZFXP17010 805 aaPredicted RBP13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 TNFSF9P41273 254 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 CLDN10P78369 228 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 HHIPL2Q6UWX4 724 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 CMASQ8NFW8 434 aaPredicted RBP13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 FBXL8Q96CD0 374 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 NPAS2Q99743 824 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 CIB1Q99828 191 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 GCOM2Q9BZD3 368 aaPredicted RBP13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 COPG2Q9UBF2 871 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 GABBR1Q9UBS5 961 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 CNTN6Q9UQ52 1028 aa13.79□□□□□ -0.2
CCDC88C-201ENST00000331194 BPTFQ12830 3046 aa13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 PRSS51A0A1B0GVH4 220 aa13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 FUOMA2VDF0 154 aa13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 SEC24DO94855 1032 aaPredicted RBP13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 TRUB2O95900 331 aaKnown RBP13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 EPGNQ6UW88 154 aa13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 SAPCD2Q86UD0 394 aa13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 SAMD3Q8N6K7 520 aa13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 KCNN1Q92952 543 aa13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 ATP2A3Q93084 1043 aa13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 TAAR1Q96RJ0 339 aa13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 EBNA1BP2Q99848 306 aaKnown RBP13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 NTPCRQ9BSD7 190 aaKnown RBP13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 COA1Q9GZY4 146 aa13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 PSMD12O00232 456 aaPredicted RBP13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 FAM189A1O60320 539 aa13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 HSPA4LO95757 839 aa13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 ERBB2P04626 1255 aa13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 GNAO1P09471 354 aa13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 CKMT2P17540 419 aa13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 KRT80Q6KB66 452 aa13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 NANOGP8Q6NSW7 305 aa13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 TMEM53Q6P2H8 277 aa13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 PDCD6IPQ8WUM4 868 aaKnown RBP13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 ISOC1Q96CN7 298 aa13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 MTMR12Q9C0I1 747 aa13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 TBCCD1Q9NVR7 557 aa13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 CCPG1Q9ULG6 757 aa13.78□□□□□ -0.2
CCDC88C-201ENST00000331194 H3BNH8 94 aa13.77□□□□□ -0.2
CCDC88C-201ENST00000331194 K7EPI3 171 aa13.77□□□□□ -0.2
CCDC88C-201ENST00000331194 ZBTB11O95625 1053 aaPredicted RBP13.77□□□□□ -0.2
CCDC88C-201ENST00000331194 ZBED1O96006 694 aa13.77□□□□□ -0.2
CCDC88C-201ENST00000331194 ARSAP15289 507 aa13.77□□□□□ -0.2
CCDC88C-201ENST00000331194 SCYL2Q6P3W7 929 aa13.77□□□□□ -0.2
CCDC88C-201ENST00000331194 KCNT2Q6UVM3 1135 aa13.77□□□□□ -0.2
CCDC88C-201ENST00000331194 CDAN1Q8IWY9 1227 aa13.77□□□□□ -0.2
CCDC88C-201ENST00000331194 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.77□□□□□ -0.2
CCDC88C-201ENST00000331194 PIWIL1Q96J94 861 aaKnown RBP13.77□□□□□ -0.2
CCDC88C-201ENST00000331194 NUF2Q9BZD4 464 aa13.77□□□□□ -0.2
CCDC88C-201ENST00000331194 INO80BQ9C086 356 aaPredicted RBP13.77□□□□□ -0.2
CCDC88C-201ENST00000331194 NAA50Q9GZZ1 169 aaKnown RBP13.77□□□□□ -0.2
CCDC88C-201ENST00000331194 SDCBP2Q9H190 292 aa13.77□□□□□ -0.2
CCDC88C-201ENST00000331194 POLR3FQ9H1D9 316 aaPredicted RBP13.77□□□□□ -0.2
CCDC88C-201ENST00000331194 TCF7L2Q9NQB0 619 aa13.77□□□□□ -0.2
CCDC88C-201ENST00000331194 TRNAU1APQ9NX07 287 aaKnown RBP13.77□□□□□ -0.2
CCDC88C-201ENST00000331194 PAK5Q9P286 719 aa13.77□□□□□ -0.2
CCDC88C-201ENST00000331194 FBXO40Q9UH90 709 aa13.77□□□□□ -0.2
CCDC88C-201ENST00000331194 JUNP05412 331 aaKnown RBP13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 ACAT1P24752 427 aaKnown RBP13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 MPSTP25325 297 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 CDH8P55286 799 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 MTX3Q5HYI7 312 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 FAM219BQ5XKK7 198 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 CYP2R1Q6VVX0 501 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 PCDH20Q8N6Y1 951 aaKnown RBP13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 PLD5Q8N7P1 536 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 COX4I2Q96KJ9 171 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 HAUS8Q9BT25 410 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 MSTO1Q9BUK6 570 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 NACA2Q9H009 215 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 WDR41Q9HAD4 459 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 NXF1Q9UBU9 619 aaKnown RBP13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 SNX13Q9Y5W8 968 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 A0A1W2PPW3 197 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 KLRG2A4D1S0 409 aaPredicted RBP13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 HTR3EA5X5Y0 456 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 NDUFB5O43674 189 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 LYPLA2O95372 231 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 LTFP02788 710 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 OCM2P0CE71 109 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 OCMP0CE72 109 aaPredicted RBP13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 TBXAS1P24557 533 aaPredicted RBP13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 KPNA1P52294 538 aaPredicted RBP13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 SESN2P58004 480 aaPredicted RBP13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 DGKZQ13574 1117 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 IKBKEQ14164 716 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 DLG2Q15700 870 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms