RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 SPATA13Q96N96 652 aa18.94■□□□□ 0.62
USP39-201ENST00000323701 SERPINB12Q96P63 405 aa18.94■□□□□ 0.62
USP39-201ENST00000323701 UBE2OQ9C0C9 1292 aaKnown RBP18.94■□□□□ 0.62
USP39-201ENST00000323701 VANGL2Q9ULK5 521 aa18.94■□□□□ 0.62
USP39-201ENST00000323701 ZMYND8Q9ULU4 1186 aaPredicted RBP18.94■□□□□ 0.62
USP39-201ENST00000323701 YIPF1Q9Y548 306 aa18.94■□□□□ 0.62
USP39-201ENST00000323701 SLC12A8A0AV02 714 aa18.93■□□□□ 0.62
USP39-201ENST00000323701 LILRB3O75022 631 aa18.93■□□□□ 0.62
USP39-201ENST00000323701 CSPG5O95196 566 aa18.93■□□□□ 0.62
USP39-201ENST00000323701 URODP06132 367 aa18.93■□□□□ 0.62
USP39-201ENST00000323701 GARSP41250 739 aaKnown RBP18.93■□□□□ 0.62
USP39-201ENST00000323701 ATP1A2P50993 1020 aa18.93■□□□□ 0.62
USP39-201ENST00000323701 ARL4CP56559 192 aa18.93■□□□□ 0.62
USP39-201ENST00000323701 PPIDQ08752 370 aaKnown RBP18.93■□□□□ 0.62
USP39-201ENST00000323701 AUHQ13825 339 aaKnown RBP18.93■□□□□ 0.62
USP39-201ENST00000323701 RAB33AQ14088 237 aa18.93■□□□□ 0.62
USP39-201ENST00000323701 MS4A13Q5J8X5 152 aa18.93■□□□□ 0.62
USP39-201ENST00000323701 ZNF534Q76KX8 674 aa18.93■□□□□ 0.62
USP39-201ENST00000323701 SPRED2Q7Z698 418 aa18.93■□□□□ 0.62
USP39-201ENST00000323701 ZSCAN18Q8TBC5 510 aaPredicted RBP18.93■□□□□ 0.62
USP39-201ENST00000323701 ZNF419Q96HQ0 510 aaPredicted RBP18.93■□□□□ 0.62
USP39-201ENST00000323701 TMEM109Q9BVC6 243 aa18.93■□□□□ 0.62
USP39-201ENST00000323701 MYO7AQ13402 2215 aa18.93■□□□□ 0.62
USP39-201ENST00000323701 HMGB1P1B2RPK0 211 aaPredicted RBP18.93■□□□□ 0.62
USP39-201ENST00000323701 RASGRF2O14827 1237 aa18.93■□□□□ 0.62
USP39-201ENST00000323701 PPP1R12AO14974 1030 aaPredicted RBP18.93■□□□□ 0.62
USP39-201ENST00000323701 IGLV3-27P01718 113 aa18.93■□□□□ 0.62
USP39-201ENST00000323701 SSTR1P30872 391 aa18.93■□□□□ 0.62
USP39-201ENST00000323701 HPDP32754 393 aaPredicted RBP18.93■□□□□ 0.62
USP39-201ENST00000323701 MAGEA6P43360 314 aa18.93■□□□□ 0.62
USP39-201ENST00000323701 PSEN1P49768 467 aa18.93■□□□□ 0.62
USP39-201ENST00000323701 FPGSQ05932 587 aa18.93■□□□□ 0.62
USP39-201ENST00000323701 ZBTB17Q13105 803 aa18.93■□□□□ 0.62
USP39-201ENST00000323701 TRIP4Q15650 581 aaPredicted RBP18.93■□□□□ 0.62
USP39-201ENST00000323701 ARHGEF18Q6ZSZ5 1173 aa18.93■□□□□ 0.62
USP39-201ENST00000323701 FBXO36Q8NEA4 188 aa18.93■□□□□ 0.62
USP39-201ENST00000323701 GORASP1Q9BQQ3 440 aa18.93■□□□□ 0.62
USP39-201ENST00000323701 ZNF840PA6NDX5 716 aa18.92■□□□□ 0.62
USP39-201ENST00000323701 CNTN5O94779 1100 aa18.92■□□□□ 0.62
USP39-201ENST00000323701 PTPN3P26045 913 aa18.92■□□□□ 0.62
USP39-201ENST00000323701 MAGOHP61326 146 aaKnown RBP18.92■□□□□ 0.62
USP39-201ENST00000323701 TPGS2Q68CL5 300 aa18.92■□□□□ 0.62
USP39-201ENST00000323701 TTC19Q6DKK2 380 aaPredicted RBP18.92■□□□□ 0.62
USP39-201ENST00000323701 C7orf61Q8IZ16 206 aa18.92■□□□□ 0.62
USP39-201ENST00000323701 KLHL23Q8NBE8 558 aa18.92■□□□□ 0.62
USP39-201ENST00000323701 TLCD1Q96CP7 247 aa18.92■□□□□ 0.62
USP39-201ENST00000323701 TBC1D31Q96DN5 1066 aa18.92■□□□□ 0.62
USP39-201ENST00000323701 ZNF512Q96ME7 567 aaPredicted RBP18.92■□□□□ 0.62
USP39-201ENST00000323701 TRIM56Q9BRZ2 755 aaKnown RBP18.92■□□□□ 0.62
USP39-201ENST00000323701 COMMD8Q9NX08 183 aa18.92■□□□□ 0.62
USP39-201ENST00000323701 GOLGA6L7A0A1B0GV03 622 aa18.92■□□□□ 0.62
USP39-201ENST00000323701 PSMB4P28070 264 aa18.92■□□□□ 0.62
USP39-201ENST00000323701 GCAP28676 217 aa18.92■□□□□ 0.62
USP39-201ENST00000323701 ZNF135P52742 658 aaPredicted RBP18.92■□□□□ 0.62
USP39-201ENST00000323701 OLIG2Q13516 323 aa18.92■□□□□ 0.62
USP39-201ENST00000323701 ALFQ53S48 1182 aa18.92■□□□□ 0.62
USP39-201ENST00000323701 CYP4X1Q8N118 509 aa18.92■□□□□ 0.62
USP39-201ENST00000323701 PDIK1LQ8N165 341 aa18.92■□□□□ 0.62
USP39-201ENST00000323701 IGSF8Q969P0 613 aa18.92■□□□□ 0.62
USP39-201ENST00000323701 C1orf74Q96LT6 269 aa18.92■□□□□ 0.62
USP39-201ENST00000323701 MRPL17Q9NRX2 175 aaKnown RBP18.92■□□□□ 0.62
USP39-201ENST00000323701 CHMP2BQ9UQN3 213 aa18.92■□□□□ 0.62
USP39-201ENST00000323701 CNPP09543 421 aaKnown RBP18.91■□□□□ 0.62
USP39-201ENST00000323701 NR1D1P20393 614 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 ELK3P41970 407 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 TWF1Q12792 350 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 PLD1Q13393 1074 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 PPIGQ13427 754 aaKnown RBP eCLIP18.91■□□□□ 0.624e-7■■□□□ 13.9
USP39-201ENST00000323701 SEMA5AQ13591 1074 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 CCDC38Q502W7 563 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 AGBL2Q5U5Z8 902 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 RAP1GAP2Q684P5 730 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 NADSYN1Q6IA69 706 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 TFAP2DQ7Z6R9 452 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 FIBCD1Q8N539 461 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 PYROXD1Q8WU10 500 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 HDAC11Q96DB2 347 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 PGM2Q96G03 612 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 ZBED2Q9BTP6 218 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 SLC39A8Q9C0K1 460 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 ZBP1Q9H171 429 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 NOL6Q9H6R4 1146 aaKnown RBP18.91■□□□□ 0.62
USP39-201ENST00000323701 VPS37BQ9H9H4 285 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 PLAC1Q9HBJ0 212 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 OLA1Q9NTK5 396 aaKnown RBP18.91■□□□□ 0.62
USP39-201ENST00000323701 PIH1D1Q9NWS0 290 aaKnown RBP18.91■□□□□ 0.62
USP39-201ENST00000323701 PLXNA4Q9HCM2 1894 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 BPTFQ12830 3046 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 DFFAO00273 331 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 COCHO43405 550 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 CD68P34810 354 aaPredicted RBP18.91■□□□□ 0.62
USP39-201ENST00000323701 TNFAIP8L3Q5GJ75 292 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 PDZD4Q76G19 769 aaPredicted RBP18.91■□□□□ 0.62
USP39-201ENST00000323701 TMEM150AQ86TG1 271 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 NLRP14Q86W24 1093 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 CIR1Q86X95 450 aaPredicted RBP18.91■□□□□ 0.62
USP39-201ENST00000323701 PDCD7Q8N8D1 485 aaKnown RBP18.91■□□□□ 0.62
USP39-201ENST00000323701 CLP1Q92989 425 aaKnown RBP18.91■□□□□ 0.62
USP39-201ENST00000323701 RNF38Q9H0F5 515 aa18.91■□□□□ 0.62
USP39-201ENST00000323701 PCDHB12Q9Y5F1 795 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms