RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, human

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLIP1-219	ENST00000620786	CDH9	Q9ULB4	789 aa		11.64	□□□□□ -0.55
CLIP1-219	ENST00000620786	SLC27A5	Q9Y2P5	690 aa		11.64	□□□□□ -0.55
CLIP1-219	ENST00000620786	GPSM3	Q9Y4H4	160 aa		11.64	□□□□□ -0.55
CLIP1-219	ENST00000620786	IFNA14	P01570	189 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	GLRA2	P23416	452 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	GCNT1	Q02742	428 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	KIF1A	Q12756	1690 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	SEL1L3	Q68CR1	1132 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	SERPINA13P	Q6UXR4	307 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	C15orf52	Q6ZUT6	534 aa	Known RBP	11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	VSIG10L	Q86VR7	867 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	CLYBL	Q8N0X4	340 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	CERS5	Q8N5B7	392 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	TDRD5	Q8NAT2	981 aa	Known RBP	11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	MYLPF	Q96A32	169 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	CCDC134	Q9H6E4	229 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	LRRC4B	Q9NT99	713 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	MEI4	A8MW99	385 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	CSH1	P0DML2	217 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	CSH2	P0DML3	217 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	PGAM1	P18669	254 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	MGAT1	P26572	445 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	NPY2R	P49146	381 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	TOMM20	Q15388	145 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	GRIK5	Q16478	980 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	CCDC142	Q17RM4	750 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	ZCCHC8	Q6NZY4	707 aa	Known RBP	11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	DNAAF5	Q86Y56	855 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	C3orf20	Q8ND61	904 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	SEC16B	Q96JE7	1060 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	PANX3	Q96QZ0	392 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	CCT8L2	Q96SF2	557 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	WDR18	Q9BV38	432 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	PRKD2	Q9BZL6	878 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	POLR1E	Q9GZS1	481 aa	Known RBP	11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	ARHGEF9	O43307	516 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	MAF	O75444	373 aa	Predicted RBP	11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	GNRH1	P01148	92 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	KRT6A	P02538	564 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	KRT6B	P04259	564 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	NFIC	P08651	508 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	EIF4B	P23588	611 aa	Known RBP	11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	FMO4	P31512	558 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	KRT6C	P48668	564 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	C21orf59	P57076	290 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	SNRPD1	P62314	119 aa	Known RBP	11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	DNAJC3	Q13217	504 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	NR6A1	Q15406	480 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	PLPPR4	Q7Z2D5	763 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	ANKRD23	Q86SG2	305 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	PAWR	Q96IZ0	340 aa	Known RBP	11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	ZFYVE1	Q9HBF4	777 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	TUBGCP4	Q9UGJ1	667 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	HPSE	Q9Y251	543 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	TNFSF13B	Q9Y275	285 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	VGLL3	A8MV65	326 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	RNF103	O00237	685 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	NUDT14	O95848	222 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	GSTM1	P09488	218 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	GRK4	P32298	578 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	TBL3	Q12788	808 aa	Known RBP	11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	CSTF3	Q12996	717 aa	Known RBP	11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	SPANXN3	Q5MJ09	141 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	USP7	Q93009	1102 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	MKL1	Q969V6	931 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	C2orf49	Q9BVC5	232 aa	Predicted RBP	11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	TMEM51	Q9NW97	253 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	SH3BP4	Q9P0V3	963 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	DUSP10	Q9Y6W6	482 aa		11.63	□□□□□ -0.55
CLIP1-219	ENST00000620786	HACD1	B0YJ81	288 aa		11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	ZNF682	O95780	498 aa		11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	EARS2	Q5JPH6	523 aa	Known RBP	11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	WLS	Q5T9L3	541 aa		11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	GRTP1	Q5TC63	336 aa		11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	SLC26A11	Q86WA9	606 aa		11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	ZSWIM2	Q8NEG5	633 aa		11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	C18orf25	Q96B23	403 aa	Predicted RBP	11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	ZC4H2	Q9NQZ6	224 aa		11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	ZNF112	Q9UJU3	913 aa		11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	S100A5	P33763	92 aa		11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	PMS1	P54277	932 aa	Known RBP	11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	BMPR2	Q13873	1038 aa		11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	CYLC2	Q14093	348 aa	Predicted RBP	11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	PCBP1	Q15365	356 aa	Known RBP eCLIP	11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	DET1	Q7L5Y6	550 aa		11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	VN1R5	Q7Z5H4	357 aa		11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	C7orf61	Q8IZ16	206 aa		11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	SPATA20	Q8TB22	786 aa		11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	ACTL9	Q8TC94	416 aa		11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	TRDMT1	O14717	391 aa	Known RBP	11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	APOA1	P02647	267 aa		11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	PPP2R1B	P30154	601 aa		11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	TM4SF1	P30408	202 aa		11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	SKP1	P63208	163 aa		11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	RUNX1T1	Q06455	604 aa		11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	TRIM60	Q495X7	471 aa		11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	TRIM69	Q86WT6	500 aa		11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	REM2	Q8IYK8	340 aa	Predicted RBP	11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	ZNF655	Q8N720	491 aa	Predicted RBP	11.62	□□□□□ -0.55
CLIP1-219	ENST00000620786	SLC28A3	Q9HAS3	691 aa		11.62	□□□□□ -0.55

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