RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 SYN3O14994 580 aa16.18■□□□□ 0.18
CPSF1-213ENST00000620219 RTN3O95197 1032 aaPredicted RBP16.18■□□□□ 0.18
CPSF1-213ENST00000620219 PPP1R15BQ5SWA1 713 aa16.18■□□□□ 0.18
CPSF1-213ENST00000620219 C16orf59Q7L2K0 433 aa16.18■□□□□ 0.18
CPSF1-213ENST00000620219 LGI2Q8N0V4 545 aa16.18■□□□□ 0.18
CPSF1-213ENST00000620219 SH3GL2Q99962 352 aa16.18■□□□□ 0.18
CPSF1-213ENST00000620219 FRMD8P1Q9BZ68 369 aaPredicted RBP16.18■□□□□ 0.18
CPSF1-213ENST00000620219 PLXNA1Q9UIW2 1896 aa16.18■□□□□ 0.18
CPSF1-213ENST00000620219 TMEM120BA0PK00 339 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 OR1E1P30953 314 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 EPHB1P54762 984 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 ANKRD20A2Q5SQ80 823 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 ANKRD20A1Q5TYW2 823 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 ANKRD20A3Q5VUR7 823 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 C12orf50Q8NA57 414 aaPredicted RBP16.17■□□□□ 0.18
CPSF1-213ENST00000620219 TEKT4Q8WW24 435 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 TTC17Q96AE7 1141 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 NT5MQ9NPB1 228 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 DONSONQ9NYP3 566 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 SHOC2Q9UQ13 582 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 CREB1P16220 341 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 CTNNB1P35222 781 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 SLC11A2P49281 568 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 KLHL38Q2WGJ6 581 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 MICALCLQ6ZW33 695 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 OR6P1Q8NGX9 317 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 CASP10Q92851 521 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 ZNF669Q96BR6 464 aaPredicted RBP16.17■□□□□ 0.18
CPSF1-213ENST00000620219 SPG21Q9NZD8 308 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 TLL1O43897 1013 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 GLUD2P49448 558 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 DSC3Q14574 896 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 ACCSLQ4AC99 568 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 NUGGCQ68CJ6 796 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 TADA2BQ86TJ2 420 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 NLRP14Q86W24 1093 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 COLGALT2Q8IYK4 626 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 ANKS4BQ8N8V4 417 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 P2RY11Q96G91 374 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 ELAC2Q9BQ52 826 aaKnown RBP16.17■□□□□ 0.18
CPSF1-213ENST00000620219 SQORQ9Y6N5 450 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 GABRDO14764 452 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 ATP5C1P36542 298 aaKnown RBP16.17■□□□□ 0.18
CPSF1-213ENST00000620219 ZNF697Q5TEC3 545 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 KDM7AQ6ZMT4 941 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 RNF19BQ6ZMZ0 732 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 PAQR9Q6ZVX9 377 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 RBM23Q86U06 439 aaKnown RBP16.17■□□□□ 0.18
CPSF1-213ENST00000620219 CIR1Q86X95 450 aaPredicted RBP16.17■□□□□ 0.18
CPSF1-213ENST00000620219 DENND1CQ8IV53 801 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 IFT43Q96FT9 208 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 TRABDQ9H4I3 376 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 ZFATQ9P243 1243 aa16.17■□□□□ 0.18
CPSF1-213ENST00000620219 NR2C2P49116 596 aa16.16■□□□□ 0.18
CPSF1-213ENST00000620219 THOC5Q13769 683 aaKnown RBP16.16■□□□□ 0.18
CPSF1-213ENST00000620219 CCSAPQ6IQ19 270 aaPredicted RBP16.16■□□□□ 0.18
CPSF1-213ENST00000620219 MRPS31Q92665 395 aaKnown RBP16.16■□□□□ 0.18
CPSF1-213ENST00000620219 NKD2Q969F2 451 aaPredicted RBP16.16■□□□□ 0.18
CPSF1-213ENST00000620219 RMDN1Q96DB5 314 aa16.16■□□□□ 0.18
CPSF1-213ENST00000620219 CCT8L2Q96SF2 557 aa16.16■□□□□ 0.18
CPSF1-213ENST00000620219 RPS6KL1Q9Y6S9 549 aa16.16■□□□□ 0.18
CPSF1-213ENST00000620219 IQANK1A0A1B0GTG1 560 aa16.16■□□□□ 0.18
CPSF1-213ENST00000620219 KRT37O76014 449 aa16.16■□□□□ 0.18
CPSF1-213ENST00000620219 ZCCHC9Q8N567 271 aaKnown RBP16.16■□□□□ 0.18
CPSF1-213ENST00000620219 EIF1ADQ8N9N8 165 aaKnown RBP16.16■□□□□ 0.18
CPSF1-213ENST00000620219 ZMIZ2Q8NF64 920 aa16.16■□□□□ 0.18
CPSF1-213ENST00000620219 ATP2A3Q93084 1043 aa16.16■□□□□ 0.18
CPSF1-213ENST00000620219 DTLQ9NZJ0 730 aa16.16■□□□□ 0.18
CPSF1-213ENST00000620219 SH3BP1Q9Y3L3 701 aa16.16■□□□□ 0.18
CPSF1-213ENST00000620219 PITPNM1O00562 1244 aa16.16■□□□□ 0.18
CPSF1-213ENST00000620219 FGBP02675 491 aa16.16■□□□□ 0.18
CPSF1-213ENST00000620219 LIG3P49916 1009 aa16.16■□□□□ 0.18
CPSF1-213ENST00000620219 MROH9Q5TGP6 573 aa16.16■□□□□ 0.18
CPSF1-213ENST00000620219 PLPP4Q5VZY2 271 aa16.16■□□□□ 0.18
CPSF1-213ENST00000620219 RFWD3Q6PCD5 774 aa16.16■□□□□ 0.18
CPSF1-213ENST00000620219 FZD10Q9ULW2 581 aa16.16■□□□□ 0.18
CPSF1-213ENST00000620219 GOLGA8TH3BQL2 631 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 CXCL14O95715 111 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 PLEKHG4Q58EX7 1191 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 MICALL1Q8N3F8 863 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 STAMBPL1Q96FJ0 436 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 VPS11Q9H270 941 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 TCRBV7S3A2A0A539 114 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 GMNCA6NCL1 334 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 H0Y626 953 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 CBX4O00257 560 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 AGBL2Q5U5Z8 902 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 RNF135Q8IUD6 432 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 CARNMT1Q8N4J0 409 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 LRRC8CQ8TDW0 803 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 CYLDQ9NQC7 956 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 FAM72CH0Y354 149 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 MAXP61244 160 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 AUHQ13825 339 aaKnown RBP16.15■□□□□ 0.18
CPSF1-213ENST00000620219 FAM72AQ5TYM5 149 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 FAM72DQ6L9T8 149 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 CNKSR3Q6P9H4 555 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 CCDC121Q6ZUS5 278 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 RPAINQ86UA6 219 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 FAM72BQ86X60 149 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms