RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 TTC17Q96AE7 1141 aa14.15□□□□□ -0.14
TRIM28-211ENST00000597968 CD93Q9NPY3 652 aa14.15□□□□□ -0.14
TRIM28-211ENST00000597968 ZMIZ1Q9ULJ6 1067 aa14.15□□□□□ -0.14
TRIM28-211ENST00000597968 APOBEC2Q9Y235 224 aaKnown RBP14.15□□□□□ -0.14
TRIM28-211ENST00000597968 CKAP5Q14008 2032 aa14.15□□□□□ -0.14
TRIM28-211ENST00000597968 FLRT2O43155 660 aa14.14□□□□□ -0.15
TRIM28-211ENST00000597968 DFNA5O60443 496 aa14.14□□□□□ -0.15
TRIM28-211ENST00000597968 TSPAN3O60637 253 aa14.14□□□□□ -0.15
TRIM28-211ENST00000597968 MAOBP27338 520 aa14.14□□□□□ -0.15
TRIM28-211ENST00000597968 GPD2P43304 727 aa14.14□□□□□ -0.15
TRIM28-211ENST00000597968 GRIA4P48058 902 aa14.14□□□□□ -0.15
TRIM28-211ENST00000597968 ST8SIA6P61647 398 aa14.14□□□□□ -0.15
TRIM28-211ENST00000597968 LRMPQ12912 555 aa14.14□□□□□ -0.15
TRIM28-211ENST00000597968 SLC12A1Q13621 1099 aa14.14□□□□□ -0.15
TRIM28-211ENST00000597968 FAM133BQ5BKY9 247 aaKnown RBP14.14□□□□□ -0.15
TRIM28-211ENST00000597968 MFN1Q8IWA4 741 aa14.14□□□□□ -0.15
TRIM28-211ENST00000597968 ZCCHC9Q8N567 271 aaKnown RBP14.14□□□□□ -0.15
TRIM28-211ENST00000597968 NDRG1Q92597 394 aaKnown RBP14.14□□□□□ -0.15
TRIM28-211ENST00000597968 SLC39A13Q96H72 371 aa14.14□□□□□ -0.15
TRIM28-211ENST00000597968 MED15Q96RN5 788 aa14.14□□□□□ -0.15
TRIM28-211ENST00000597968 CDC6Q99741 560 aa14.14□□□□□ -0.15
TRIM28-211ENST00000597968 FSCN3Q9NQT6 498 aa14.14□□□□□ -0.15
TRIM28-211ENST00000597968 MAN1B1Q9UKM7 699 aa14.14□□□□□ -0.15
TRIM28-211ENST00000597968 ZBTB32Q9Y2Y4 487 aaPredicted RBP14.14□□□□□ -0.15
TRIM28-211ENST00000597968 PCNX2A6NKB5 2137 aa14.14□□□□□ -0.15
TRIM28-211ENST00000597968 SPAARA0A1B0GVQ0 90 aa14.13□□□□□ -0.15
TRIM28-211ENST00000597968 TARSL2A2RTX5 802 aaKnown RBP14.13□□□□□ -0.15
TRIM28-211ENST00000597968 PPP1R3GB7ZBB8 358 aa14.13□□□□□ -0.15
TRIM28-211ENST00000597968 RNF225M0QZC1 329 aaPredicted RBP14.13□□□□□ -0.15
TRIM28-211ENST00000597968 MSI1O43347 362 aaKnown RBP14.13□□□□□ -0.15
TRIM28-211ENST00000597968 HYAL3O43820 417 aaPredicted RBP14.13□□□□□ -0.15
TRIM28-211ENST00000597968 SH3BP5O60239 455 aa14.13□□□□□ -0.15
TRIM28-211ENST00000597968 TBL1XO60907 577 aa14.13□□□□□ -0.15
TRIM28-211ENST00000597968 RNASEH1O60930 286 aaKnown RBP14.13□□□□□ -0.15
TRIM28-211ENST00000597968 CBFA2T3O75081 653 aa14.13□□□□□ -0.15
TRIM28-211ENST00000597968 MOCS3O95396 460 aa14.13□□□□□ -0.15
TRIM28-211ENST00000597968 AFPP02771 609 aaKnown RBP14.13□□□□□ -0.15
TRIM28-211ENST00000597968 SRPRAP08240 638 aaKnown RBP14.13□□□□□ -0.15
TRIM28-211ENST00000597968 KCNH2Q12809 1159 aa14.13□□□□□ -0.15
TRIM28-211ENST00000597968 MORC3Q14149 939 aa14.13□□□□□ -0.15
TRIM28-211ENST00000597968 HNRNPA1L2Q32P51 320 aaKnown RBP14.13□□□□□ -0.15
TRIM28-211ENST00000597968 ZNF776Q68DI1 518 aaPredicted RBP14.13□□□□□ -0.15
TRIM28-211ENST00000597968 NELFBQ8WX92 580 aa14.13□□□□□ -0.15
TRIM28-211ENST00000597968 SORCS1Q8WY21 1168 aa14.13□□□□□ -0.15
TRIM28-211ENST00000597968 LMLNQ96KR4 655 aa14.13□□□□□ -0.15
TRIM28-211ENST00000597968 MIR1-1HGQ9H1L0 117 aa14.13□□□□□ -0.15
TRIM28-211ENST00000597968 RSPH9Q9H1X1 276 aaPredicted RBP14.13□□□□□ -0.15
TRIM28-211ENST00000597968 GAREM1Q9H706 876 aa14.13□□□□□ -0.15
TRIM28-211ENST00000597968 PRSS16Q9NQE7 514 aa14.13□□□□□ -0.15
TRIM28-211ENST00000597968 TM7SF3Q9NS93 570 aa14.13□□□□□ -0.15
TRIM28-211ENST00000597968 TMEM51Q9NW97 253 aa14.13□□□□□ -0.15
TRIM28-211ENST00000597968 EIF2B4Q9UI10 523 aaKnown RBP14.13□□□□□ -0.15
TRIM28-211ENST00000597968 PCOLCE2Q9UKZ9 415 aa14.13□□□□□ -0.15
TRIM28-211ENST00000597968 NCKAP1Q9Y2A7 1128 aa14.13□□□□□ -0.15
TRIM28-211ENST00000597968 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.13□□□□□ -0.15
TRIM28-211ENST00000597968 CACNA1EQ15878 2313 aa14.13□□□□□ -0.15
TRIM28-211ENST00000597968 ZZEF1O43149 2961 aa14.12□□□□□ -0.15
TRIM28-211ENST00000597968 SPEGQ15772 3267 aa14.12□□□□□ -0.15
TRIM28-211ENST00000597968 PAPSS1O43252 624 aaPredicted RBP14.12□□□□□ -0.15
TRIM28-211ENST00000597968 GABBR2O75899 941 aa14.12□□□□□ -0.15
TRIM28-211ENST00000597968 SEMA4FO95754 770 aa14.12□□□□□ -0.15
TRIM28-211ENST00000597968 GLI1P08151 1106 aa14.12□□□□□ -0.15
TRIM28-211ENST00000597968 SLC2A3P11169 496 aa14.12□□□□□ -0.15
TRIM28-211ENST00000597968 CD44P16070 742 aaKnown RBP14.12□□□□□ -0.15
TRIM28-211ENST00000597968 BRD2P25440 801 aaKnown RBP14.12□□□□□ -0.15
TRIM28-211ENST00000597968 CD27P26842 260 aa14.12□□□□□ -0.15
TRIM28-211ENST00000597968 RGS7P49802 495 aa14.12□□□□□ -0.15
TRIM28-211ENST00000597968 OXCT1P55809 520 aa14.12□□□□□ -0.15
TRIM28-211ENST00000597968 RPS14P62263 151 aaKnown RBP14.12□□□□□ -0.15
TRIM28-211ENST00000597968 PAK1Q13153 545 aa14.12□□□□□ -0.15
TRIM28-211ENST00000597968 CDH18Q13634 790 aa14.12□□□□□ -0.15
TRIM28-211ENST00000597968 MS4A13Q5J8X5 152 aa14.12□□□□□ -0.15
TRIM28-211ENST00000597968 TTC39BQ5VTQ0 682 aaPredicted RBP14.12□□□□□ -0.15
TRIM28-211ENST00000597968 TMEM110Q86TL2 294 aa14.12□□□□□ -0.15
TRIM28-211ENST00000597968 BAHD1Q8TBE0 780 aaPredicted RBP14.12□□□□□ -0.15
TRIM28-211ENST00000597968 DQX1Q8TE96 717 aaKnown RBP14.12□□□□□ -0.15
TRIM28-211ENST00000597968 CYB5D2Q8WUJ1 264 aa14.12□□□□□ -0.15
TRIM28-211ENST00000597968 SKA1Q96BD8 255 aa14.12□□□□□ -0.15
TRIM28-211ENST00000597968 FCRL2Q96LA5 508 aaPredicted RBP14.12□□□□□ -0.15
TRIM28-211ENST00000597968 PPP1R9BQ96SB3 815 aa14.12□□□□□ -0.15
TRIM28-211ENST00000597968 ZSWIM1Q9BR11 485 aa14.12□□□□□ -0.15
TRIM28-211ENST00000597968 SLC4A5Q9BY07 1137 aa14.12□□□□□ -0.15
TRIM28-211ENST00000597968 POPDC2Q9HBU9 364 aa14.12□□□□□ -0.15
TRIM28-211ENST00000597968 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.12□□□□□ -0.15
TRIM28-211ENST00000597968 FZD4Q9ULV1 537 aa14.12□□□□□ -0.15
TRIM28-211ENST00000597968 FREM2Q5SZK8 3169 aa14.12□□□□□ -0.15
TRIM28-211ENST00000597968 GON4LQ3T8J9 2241 aa14.11□□□□□ -0.15
TRIM28-211ENST00000597968 CAPN9O14815 690 aa14.11□□□□□ -0.15
TRIM28-211ENST00000597968 PCDHGA12O60330 932 aa14.11□□□□□ -0.15
TRIM28-211ENST00000597968 GADD45BO75293 160 aaPredicted RBP14.11□□□□□ -0.15
TRIM28-211ENST00000597968 TOP3BO95985 862 aaKnown RBP14.11□□□□□ -0.15
TRIM28-211ENST00000597968 APOEP02649 317 aa14.11□□□□□ -0.15
TRIM28-211ENST00000597968 FYNP06241 537 aa14.11□□□□□ -0.15
TRIM28-211ENST00000597968 FTH1P19P0C7X4 201 aa14.11□□□□□ -0.15
TRIM28-211ENST00000597968 HLA-EP13747 358 aa14.11□□□□□ -0.15
TRIM28-211ENST00000597968 SPINK2P20155 84 aa14.11□□□□□ -0.15
TRIM28-211ENST00000597968 SLC6A4P31645 630 aa14.11□□□□□ -0.15
TRIM28-211ENST00000597968 CD70P32970 193 aa14.11□□□□□ -0.15
TRIM28-211ENST00000597968 ACSL1P33121 698 aa14.11□□□□□ -0.15
TRIM28-211ENST00000597968 VASPP50552 380 aaPredicted RBP14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms