RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ST8SIA6P61647 398 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 SNRPFP62306 86 aaKnown RBP7.64□□□□□ -1.19
VPS4A-203ENST00000564399 GABREP78334 506 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 ASIC1P78348 528 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 CEBPZQ03701 1054 aaKnown RBP7.64□□□□□ -1.19
VPS4A-203ENST00000564399 PDE4CQ08493 712 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 VAC14Q08AM6 782 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 SGSM1Q2NKQ1 1148 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 HS1BP3Q53T59 392 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 FAM26FQ5R3K3 315 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 ADIPOR2Q86V24 386 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 AHI1Q8N157 1196 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 ARHGAP18Q8N392 663 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 OXR1Q8N573 874 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 OR2T34Q8NGX1 318 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 PLEKHO2Q8TD55 490 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 RFFLQ8WZ73 363 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 TTC9Q92623 222 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 PLD4Q96BZ4 506 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 TMX3Q96JJ7 454 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 LRRC27Q9C0I9 530 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 GZF1Q9H116 711 aaPredicted RBP7.64□□□□□ -1.19
VPS4A-203ENST00000564399 RSPH9Q9H1X1 276 aaPredicted RBP7.64□□□□□ -1.19
VPS4A-203ENST00000564399 NEUROG2Q9H2A3 272 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 EBF2Q9HAK2 575 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 SERGEFQ9UGK8 458 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 NOTCH2Q04721 2471 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 TBC1D3DA0A087WVF3 549 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 TBC1D3IA0A087WXS9 549 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 A0A087X0B3 334 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 TBC1D3EA0A087X179 549 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 TBC1D3KA0A087X1G2 549 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 VPS37CA5D8V6 355 aaPredicted RBP7.63□□□□□ -1.19
VPS4A-203ENST00000564399 TBC1D3FA6NER0 549 aaPredicted RBP7.63□□□□□ -1.19
VPS4A-203ENST00000564399 LRRIQ3A6PVS8 624 aaPredicted RBP7.63□□□□□ -1.19
VPS4A-203ENST00000564399 TBC1D3LB9A6J9 549 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 MID1O15344 667 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 SIGLEC6O43699 453 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 SDC3O75056 442 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 SIN3BO75182 1162 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 USP12O75317 370 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 C4BPAP04003 597 aaKnown RBP7.63□□□□□ -1.19
VPS4A-203ENST00000564399 RPN1P04843 607 aaKnown RBP7.63□□□□□ -1.19
VPS4A-203ENST00000564399 TBC1D3HP0C7X1 549 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 C7P10643 843 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 ACP1P24666 158 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 RXRGP48443 463 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 CSRP3P50461 194 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 CCR5P51681 352 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 ZNF445P59923 1031 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 YWHAGP61981 247 aaKnown RBP eCLIP7.63□□□□□ -1.19
VPS4A-203ENST00000564399 AMPD3Q01432 767 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 EHHADHQ08426 723 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 KCNJ12Q14500 433 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 CST6Q15828 149 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 KMT5BQ4FZB7 885 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 SFMBT2Q5VUG0 894 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 KIAA1614Q5VZ46 1190 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 TBC1D3GQ6DHY5 549 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 TBC1D3CQ6IPX1 549 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 SPOPLQ6IQ16 392 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 EPM2AIP1Q7L775 607 aaPredicted RBP7.63□□□□□ -1.19
VPS4A-203ENST00000564399 MMAAQ8IVH4 418 aaKnown RBP7.63□□□□□ -1.19
VPS4A-203ENST00000564399 FAM217AQ8IXS0 508 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 ZC3H3Q8IXZ2 948 aaKnown RBP7.63□□□□□ -1.19
VPS4A-203ENST00000564399 TBC1D3Q8IZP1 549 aaPredicted RBP7.63□□□□□ -1.19
VPS4A-203ENST00000564399 OR14C36Q8NHC7 312 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 PARD3BQ8TEW8 1205 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 TAF4BQ92750 862 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 HIC2Q96JB3 615 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 DEPDC7Q96QD5 511 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 TWNKQ96RR1 684 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.63□□□□□ -1.19
VPS4A-203ENST00000564399 NT5C1AQ9BXI3 368 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 DUSP16Q9BY84 665 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 DPH1Q9BZG8 443 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 TRIM4Q9C037 500 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 FAM117AQ9C073 453 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 DNAI2Q9GZS0 605 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 ERVMER34-1Q9H9K5 563 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 THSD1Q9NS62 852 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 WDR70Q9NW82 654 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 IL17BQ9UHF5 180 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 USP3Q9Y6I4 520 aa7.63□□□□□ -1.19
VPS4A-203ENST00000564399 UBE4BO95155 1302 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 TRIM38O00635 465 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 MAGEC1O60732 1142 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 TBL1XO60907 577 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 CD58P19256 250 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 SLC8A1P32418 973 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 CD70P32970 193 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 PIK3CAP42336 1068 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 ASPAP45381 313 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 LSSP48449 732 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 PSMD8P48556 350 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 ERVPABLB-1P60509 514 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 NFATC3Q12968 1075 aa7.62□□□□□ -1.19
VPS4A-203ENST00000564399 ZNF211Q13398 564 aaPredicted RBP7.62□□□□□ -1.19
VPS4A-203ENST00000564399 TRIP4Q15650 581 aaPredicted RBP7.62□□□□□ -1.19
VPS4A-203ENST00000564399 PROX2Q3B8N5 592 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms