RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 BCAR3O75815 825 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 CNTN5O94779 1100 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 PLAUP00749 431 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 RPS6KB1P23443 525 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 ZNF84P51523 738 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 SLC37A1P57057 533 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 FOXL2P58012 376 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 YPEL5P62699 121 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 CFHR1Q03591 330 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 POSTNQ15063 836 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 TIGD6Q17RP2 521 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 FAM110CQ1W6H9 321 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 GALNTL6Q49A17 601 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 TFAP2DQ7Z6R9 452 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 YTHDF3Q7Z739 585 aaKnown RBP4.3□□□□□ -1.72
CD44-233ENST00000531141 ZNF575Q86XF7 245 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 ANKRD42Q8N9B4 389 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 DDB2Q92466 427 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 RUBCNQ92622 972 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 CELF1Q92879 486 aaKnown RBP4.3□□□□□ -1.72
CD44-233ENST00000531141 TRIM63Q969Q1 353 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 TRAPPC9Q96Q05 1148 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 PPCSQ9HAB8 311 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 SEPSECSQ9HD40 501 aaKnown RBP4.3□□□□□ -1.72
CD44-233ENST00000531141 G6PC2Q9NQR9 355 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 KLHL13Q9P2N7 655 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 SRP68Q9UHB9 627 aaKnown RBP4.3□□□□□ -1.72
CD44-233ENST00000531141 LZTS1Q9Y250 596 aa4.3□□□□□ -1.72
CD44-233ENST00000531141 CYP3A7-CYP3A51PA0A087WV96 503 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 SMIM35A0A1B0GVV1 85 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 AKR1A1P14550 325 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 TFEBP19484 476 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 TGM2P21980 687 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 CYP3A7P24462 503 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 MPGP29372 298 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 IDUAP35475 653 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 ADD2P35612 726 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 ARHGAP25P42331 645 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 HALP42357 657 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 SOX2P48431 317 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 SLC12A2P55011 1212 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 DHX8Q14562 1220 aaKnown RBP4.29□□□□□ -1.72
CD44-233ENST00000531141 ADCK5Q3MIX3 580 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 COLEC12Q5KU26 742 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 GORABQ5T7V8 394 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 MORN5Q5VZ52 161 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 SLC18B1Q6NT16 456 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 ZNF474Q6S9Z5 364 aaPredicted RBP4.29□□□□□ -1.72
CD44-233ENST00000531141 RBM44Q6ZP01 1051 aaKnown RBP4.29□□□□□ -1.72
CD44-233ENST00000531141 ADGRF3Q8IZF5 1079 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 OR6Y1Q8NGX8 325 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 SPPL3Q8TCT6 385 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 PIGKQ92643 395 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 CUL5Q93034 780 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 GPR78Q96P69 363 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 ABHD14AQ9BUJ0 271 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 GATA5Q9BWX5 397 aaPredicted RBP4.29□□□□□ -1.72
CD44-233ENST00000531141 TM2D2Q9BX73 214 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 PRSS22Q9GZN4 317 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 PI4KBQ9UBF8 816 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 BAG5Q9UL15 447 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 SLC12A4Q9UP95 1085 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 B3GNT3Q9Y2A9 372 aa4.29□□□□□ -1.72
CD44-233ENST00000531141 COPG1Q9Y678 874 aaKnown RBP4.29□□□□□ -1.72
CD44-233ENST00000531141 CYP2D7A0A087X1C5 515 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 E5RJQ4 531 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 HNRNPRO43390 633 aaKnown RBP4.28□□□□□ -1.72
CD44-233ENST00000531141 FAM155BO75949 473 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 HEXIM1O94992 359 aaKnown RBP4.28□□□□□ -1.72
CD44-233ENST00000531141 KAT7O95251 611 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 TFRCP02786 760 aaKnown RBP4.28□□□□□ -1.72
CD44-233ENST00000531141 TK1P04183 234 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 ENO1P06733 434 aaKnown RBP4.28□□□□□ -1.72
CD44-233ENST00000531141 CD63P08962 238 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 PRR35P0CG20 571 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 DHRS4L1P0CG22 281 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 KELP23276 732 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 ATP5F1P24539 256 aaPredicted RBP4.28□□□□□ -1.72
CD44-233ENST00000531141 PCP4P48539 62 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 RCAN1P53805 252 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 PRKAA2P54646 552 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 GHRHRQ02643 423 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 MTA1Q13330 715 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 SMAD1Q15797 465 aaKnown RBP4.28□□□□□ -1.72
CD44-233ENST00000531141 SRSF7Q16629 238 aaKnown RBP eCLIP4.28□□□□□ -1.72
CD44-233ENST00000531141 ANXA2RQ3ZCQ2 193 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 SUPT20HL1Q3ZLR7 823 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 INO80DQ53TQ3 878 aaPredicted RBP4.28□□□□□ -1.72
CD44-233ENST00000531141 RHPN2Q8IUC4 686 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 CNGA4Q8IV77 575 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 SMC5Q8IY18 1101 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 BCAS4Q8TDM0 211 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 KAT2BQ92831 832 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 SDCCAG3Q96C92 435 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 PIGSQ96S52 555 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 NPAS1Q99742 590 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 SH2D3AQ9BRG2 576 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 TWSG1Q9GZX9 223 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 SFXN1Q9H9B4 322 aa4.28□□□□□ -1.72
CD44-233ENST00000531141 RASSF1Q9NS23 344 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms