RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 MAVSQ7Z434 540 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 HACE1Q8IYU2 909 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 PHC3Q8NDX5 983 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 SHKBP1Q8TBC3 707 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 CDKL2Q92772 493 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 SNX27Q96L92 541 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 CEP41Q9BYV8 373 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 PLEKHA5Q9HAU0 1116 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 RNF19AQ9NV58 838 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 GJD2Q9UKL4 321 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 DERAQ9Y315 318 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 A0A088AWK7 358 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 ASB14A6NK59 587 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 CXCL11O14625 94 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 ITGA2BP08514 1039 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 PGAM1P18669 254 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 BCAT1P54687 386 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 GLRA4Q5JXX5 417 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 MARCH8Q5T0T0 291 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 C6orf163Q5TEZ5 329 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 FAM131BQ86XD5 332 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 ERO1BQ86YB8 467 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 LRRC52Q8N7C0 313 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 PPTC7Q8NI37 304 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 MROH8Q9H579 483 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 STN1Q9H668 368 aaKnown RBP19.8■□□□□ 0.76
VPS28-213ENST00000530983 EIF2B3Q9NR50 452 aaKnown RBP19.8■□□□□ 0.76
VPS28-213ENST00000530983 RNF103O00237 685 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 PDGFRBP09619 1106 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 HOXA11P31270 313 aaPredicted RBP19.79■□□□□ 0.76
VPS28-213ENST00000530983 ARRB2P32121 409 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 ARL4AP40617 200 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 SMAD1Q15797 465 aaKnown RBP19.79■□□□□ 0.76
VPS28-213ENST00000530983 DCAF4L1Q3SXM0 396 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 STRADAQ7RTN6 431 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 C10orf107Q8IVU9 208 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 SLC25A41Q8N5S1 370 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 KBTBD7Q8WVZ9 684 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 GATA6Q92908 595 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 IFT43Q96FT9 208 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 P2RY11Q96G91 374 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 SORT1Q99523 831 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 VCXQ9H320 206 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.79■□□□□ 0.76
VPS28-213ENST00000530983 IL1RAPL1Q9NZN1 696 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 DCDC2Q9UHG0 476 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 FZD10Q9ULW2 581 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 HES2Q9Y543 173 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 PROCP04070 461 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 CYP2C8P10632 490 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 LMO2P25791 158 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 PPM1JQ5JR12 505 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 BSPRYQ5W0U4 402 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 ATP2A3Q93084 1043 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 EIF2AQ9BY44 585 aaKnown RBP19.79■□□□□ 0.76
VPS28-213ENST00000530983 SYBUQ9NX95 663 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 PPM1HQ9ULR3 514 aa19.79■□□□□ 0.76
VPS28-213ENST00000530983 OPHN1O60890 802 aa19.78■□□□□ 0.76
VPS28-213ENST00000530983 SERPINE1P05121 402 aa19.78■□□□□ 0.76
VPS28-213ENST00000530983 PSMB4P28070 264 aa19.78■□□□□ 0.76
VPS28-213ENST00000530983 IREB2P48200 963 aaKnown RBP19.78■□□□□ 0.76
VPS28-213ENST00000530983 AP2B1P63010 937 aa19.78■□□□□ 0.76
VPS28-213ENST00000530983 SLC25A3Q00325 362 aa19.78■□□□□ 0.76
VPS28-213ENST00000530983 KIZQ2M2Z5 673 aa19.78■□□□□ 0.76
VPS28-213ENST00000530983 C9orf57Q5W0N0 161 aa19.78■□□□□ 0.76
VPS28-213ENST00000530983 DPY19L2Q6NUT2 758 aa19.78■□□□□ 0.76
VPS28-213ENST00000530983 MOB2Q70IA6 237 aa19.78■□□□□ 0.76
VPS28-213ENST00000530983 CCNJLQ8IV13 435 aa19.78■□□□□ 0.76
VPS28-213ENST00000530983 ZFAND2BQ8WV99 257 aa19.78■□□□□ 0.76
VPS28-213ENST00000530983 GPAMQ9HCL2 828 aa19.78■□□□□ 0.76
VPS28-213ENST00000530983 TMPRSS4Q9NRS4 437 aa19.78■□□□□ 0.76
VPS28-213ENST00000530983 DNAJB4Q9UDY4 337 aa19.78■□□□□ 0.76
VPS28-213ENST00000530983 SCOCQ9UIL1 159 aa19.78■□□□□ 0.76
VPS28-213ENST00000530983 APOBEC2Q9Y235 224 aaKnown RBP19.78■□□□□ 0.76
VPS28-213ENST00000530983 PDCD11Q14690 1871 aaKnown RBP19.78■□□□□ 0.76
VPS28-213ENST00000530983 SIN3BO75182 1162 aa19.77■□□□□ 0.76
VPS28-213ENST00000530983 GMPRP36959 345 aa19.77■□□□□ 0.76
VPS28-213ENST00000530983 RPS6KA3P51812 740 aa19.77■□□□□ 0.76
VPS28-213ENST00000530983 PDE1BQ01064 536 aa19.77■□□□□ 0.76
VPS28-213ENST00000530983 NAB1Q13506 487 aa19.77■□□□□ 0.76
VPS28-213ENST00000530983 FOXB2Q5VYV0 432 aa19.77■□□□□ 0.76
VPS28-213ENST00000530983 POU5F2Q8N7G0 328 aa19.77■□□□□ 0.76
VPS28-213ENST00000530983 GSTCDQ8NEC7 633 aa19.77■□□□□ 0.76
VPS28-213ENST00000530983 PNPOQ9NVS9 261 aa19.77■□□□□ 0.76
VPS28-213ENST00000530983 DDX43Q9NXZ2 648 aaKnown RBP19.77■□□□□ 0.76
VPS28-213ENST00000530983 TMEM216Q9P0N5 145 aa19.77■□□□□ 0.76
VPS28-213ENST00000530983 RCOR3Q9P2K3 495 aaPredicted RBP19.77■□□□□ 0.76
VPS28-213ENST00000530983 KCNH4Q9UQ05 1017 aa19.77■□□□□ 0.76
VPS28-213ENST00000530983 H3BRB1 525 aa19.77■□□□□ 0.76
VPS28-213ENST00000530983 RTN3O95197 1032 aaPredicted RBP19.77■□□□□ 0.76
VPS28-213ENST00000530983 MATKP42679 507 aa19.77■□□□□ 0.76
VPS28-213ENST00000530983 TMCO4Q5TGY1 634 aa19.77■□□□□ 0.76
VPS28-213ENST00000530983 CRYBG2Q8N1P7 616 aa19.77■□□□□ 0.76
VPS28-213ENST00000530983 BEST2Q8NFU1 509 aa19.77■□□□□ 0.76
VPS28-213ENST00000530983 NDRG1Q92597 394 aaKnown RBP19.77■□□□□ 0.76
VPS28-213ENST00000530983 TTC1Q99614 292 aa19.77■□□□□ 0.76
VPS28-213ENST00000530983 TUT1Q9H6E5 874 aaKnown RBP19.77■□□□□ 0.76
VPS28-213ENST00000530983 NDE1Q9NXR1 346 aa19.77■□□□□ 0.76
VPS28-213ENST00000530983 COPG2Q9UBF2 871 aa19.77■□□□□ 0.76
VPS28-213ENST00000530983 ZNF195O14628 629 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms