RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 C3orf58Q8NDZ4 430 aa6.39□□□□□ -1.39
SSBP1-213ENST00000496622 ACTRT1Q8TDG2 376 aa6.39□□□□□ -1.39
SSBP1-213ENST00000496622 TMEM176AQ96HP8 235 aa6.39□□□□□ -1.39
SSBP1-213ENST00000496622 LRFN3Q9BTN0 628 aa6.39□□□□□ -1.39
SSBP1-213ENST00000496622 BCO2Q9BYV7 579 aa6.39□□□□□ -1.39
SSBP1-213ENST00000496622 MIS12Q9H081 205 aa6.39□□□□□ -1.39
SSBP1-213ENST00000496622 ACBD3Q9H3P7 528 aa6.39□□□□□ -1.39
SSBP1-213ENST00000496622 CHST7Q9NS84 486 aa6.39□□□□□ -1.39
SSBP1-213ENST00000496622 DDX56Q9NY93 547 aaKnown RBP6.39□□□□□ -1.39
SSBP1-213ENST00000496622 ZNF180Q9UJW8 692 aa6.39□□□□□ -1.39
SSBP1-213ENST00000496622 TSPAN16Q9UKR8 245 aa6.39□□□□□ -1.39
SSBP1-213ENST00000496622 CACNA1GO43497 2377 aa6.39□□□□□ -1.39
SSBP1-213ENST00000496622 CASTOR2A6NHX0 329 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 E5RJQ4 531 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 CLDN5O00501 218 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 C2CD2LO14523 706 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 MAP2K7O14733 419 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 WIPF1O43516 503 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 RALAP11233 206 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 TFE3P19532 575 aaPredicted RBP6.38□□□□□ -1.39
SSBP1-213ENST00000496622 CD9P21926 228 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 IL1R2P27930 398 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 FNTAP49354 379 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 AP3M2P53677 418 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 YARSP54577 528 aaKnown RBP6.38□□□□□ -1.39
SSBP1-213ENST00000496622 NRLP54845 237 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 GJA9P57773 515 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 TNNC1P63316 161 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 RBP5P82980 135 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 TAGLNQ01995 201 aaKnown RBP6.38□□□□□ -1.39
SSBP1-213ENST00000496622 MSLNQ13421 630 aaPredicted RBP6.38□□□□□ -1.39
SSBP1-213ENST00000496622 ZBTB6Q15916 424 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 PTGISQ16647 500 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 FAM26DQ5JW98 314 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 ARMC4Q5T2S8 1044 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 PMF1Q6P1K2 205 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 ALKAL1Q6UXT8 129 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 ARHGEF18Q6ZSZ5 1173 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 ZNF572Q7Z3I7 529 aaPredicted RBP6.38□□□□□ -1.39
SSBP1-213ENST00000496622 RASGEF1CQ8N431 466 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 TAB3Q8N5C8 712 aaPredicted RBP6.38□□□□□ -1.39
SSBP1-213ENST00000496622 ARFGAP1Q8N6T3 406 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 TMEM35BQ8NCS4 154 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 OR2W6PQ8NHA6 318 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 CCDC110Q8TBZ0 833 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 BRSK1Q8TDC3 778 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 CLEC4CQ8WTT0 213 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 RSAD2Q8WXG1 361 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 PBKQ96KB5 322 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 RPGRIP1Q96KN7 1286 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 PWWP2AQ96N64 755 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 DRC3Q9H069 523 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 SAP130Q9H0E3 1048 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 CARD9Q9H257 536 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 KLC4Q9NSK0 619 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 UVRAGQ9P2Y5 699 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 ATXN10Q9UBB4 475 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 ZC3H7BQ9UGR2 993 aaKnown RBP6.38□□□□□ -1.39
SSBP1-213ENST00000496622 INPP5FQ9Y2H2 1132 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 SNX24Q9Y343 169 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 PCDHA3Q9Y5H8 950 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 VCANP13611 3396 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 SCN1AP35498 2009 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 KIAA0100Q14667 2235 aaKnown RBP6.38□□□□□ -1.39
SSBP1-213ENST00000496622 MGAMO43451 1857 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 A8MXQ7 604 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 IFRD1O00458 451 aaPredicted RBP6.38□□□□□ -1.39
SSBP1-213ENST00000496622 KPNA6O60684 536 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 PFDN1O60925 122 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 SEC24DO94855 1032 aaPredicted RBP6.38□□□□□ -1.39
SSBP1-213ENST00000496622 CD48P09326 243 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 ATF7P17544 494 aaPredicted RBP6.38□□□□□ -1.39
SSBP1-213ENST00000496622 ADORA2BP29275 332 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 ECHS1P30084 290 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 WEE1P30291 646 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 CTNNA1P35221 906 aaKnown RBP6.38□□□□□ -1.39
SSBP1-213ENST00000496622 GPD2P43304 727 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 CRYBB1P53674 252 aaPredicted RBP6.38□□□□□ -1.39
SSBP1-213ENST00000496622 ATXN1P54253 815 aaKnown RBP6.38□□□□□ -1.39
SSBP1-213ENST00000496622 DYNLT1P63172 113 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 ATP11AP98196 1134 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 DYNC1I2Q13409 638 aaKnown RBP6.38□□□□□ -1.39
SSBP1-213ENST00000496622 SURF1Q15526 300 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 C15orf59Q2T9L4 293 aaPredicted RBP6.38□□□□□ -1.39
SSBP1-213ENST00000496622 LRIT3Q3SXY7 679 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 C9orf57Q5W0N0 161 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 PLEKHA7Q6IQ23 1121 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 TRNP1Q6NT89 227 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 C11orf63Q6NUN7 778 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 DSTYKQ6XUX3 929 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 CCDC33Q8N5R6 958 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 FEZF2Q8TBJ5 459 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 RAET1EQ8TD07 263 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 RAPGEF5Q92565 580 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 ARHGEF2Q92974 986 aaKnown RBP6.38□□□□□ -1.39
SSBP1-213ENST00000496622 PPP2R3CQ969Q6 453 aa6.38□□□□□ -1.39
SSBP1-213ENST00000496622 MAGOHBQ96A72 148 aaKnown RBP6.38□□□□□ -1.39
SSBP1-213ENST00000496622 NAF1Q96HR8 494 aaKnown RBP6.38□□□□□ -1.39
SSBP1-213ENST00000496622 MTG1Q9BT17 334 aaPredicted RBP6.38□□□□□ -1.39
SSBP1-213ENST00000496622 FAM167BQ9BTA0 163 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms