RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 F8VP50 259 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 VNN1O95497 513 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 CKMP06732 381 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 KRT13P13646 458 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 TRIM21P19474 475 aaKnown RBP7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 PIK3CAP42336 1068 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 SOX9P48436 509 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 NOP14P78316 857 aaKnown RBP7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 AMPD2Q01433 879 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 ENPEPQ07075 957 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 TNK2Q07912 1038 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 RUNX3Q13761 415 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 MTF1Q14872 753 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 PDGFRLQ15198 375 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 DGKKQ5KSL6 1271 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 SCARA5Q6ZMJ2 495 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 INTS8Q75QN2 995 aaKnown RBP7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 FAM186BQ8IYM0 893 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 MFSD4AQ8N468 514 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 ARL14EPQ8N8R7 260 aaPredicted RBP7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 TTC8Q8TAM2 541 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 TAF4BQ92750 862 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 ATP2A3Q93084 1043 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 EXOC4Q96A65 974 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 CCDC120Q96HB5 630 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 C8orf48Q96LL4 319 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 TTLL2Q9BWV7 592 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 B3GNT5Q9BYG0 378 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 IMPG2Q9BZV3 1241 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 EBF3Q9H4W6 596 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 SP110Q9HB58 689 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 RMND1Q9NWS8 449 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 TRPM5Q9NZQ8 1165 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 NME7Q9Y5B8 376 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 KIAA1549LQ6ZVL6 1849 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 RALGAPA1Q6GYQ0 2036 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 MYOFQ9NZM1 2061 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 FRYLO94915 3013 aa7.21□□□□□ -1.26
CCDC88A-213ENST00000476903 SPAG17Q6Q759 2223 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 CLDN5O00501 218 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 NDUFB5O43674 189 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 AKAP3O75969 853 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 RTN3O95197 1032 aaPredicted RBP7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 SMC2O95347 1197 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 ASS1P00966 412 aaKnown RBP7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 HLA-DRAP01903 254 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 TCF3P15923 654 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 HDCP19113 662 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 PSMC2P35998 433 aaKnown RBP7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 CXCL12P48061 93 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 IFNAR2P48551 515 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 NDST1P52848 882 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 CACNA2D1P54289 1103 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 CDH8P55286 799 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 GRSF1Q12849 480 aaKnown RBP eCLIP7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 ADAM9Q13443 819 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 PNOCQ13519 176 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 SLBPQ14493 270 aaKnown RBP eCLIP7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 PON2Q15165 354 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 ZNF77Q15935 545 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 EDRF1Q3B7T1 1238 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 ZCWPW2Q504Y3 356 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 RALGPS1Q5JS13 557 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 C1orf220Q5T0J3 134 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 SFRP5Q5T4F7 317 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 TRIM68Q6AZZ1 485 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 TSSK4Q6SA08 328 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 THAP5Q7Z6K1 395 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 UNC93AQ86WB7 457 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 NUP93Q8N1F7 819 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 SYNPOQ8N3V7 929 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 SPEM1Q8N4L4 309 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 CPA6Q8N4T0 437 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 ZBTB44Q8NCP5 570 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 CCDC150Q8NCX0 1101 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 PDZD8Q8NEN9 1154 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 RIN3Q8TB24 985 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 SH3RF2Q8TEC5 729 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 OSCP1Q8WVF1 389 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 OVCA2Q8WZ82 227 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 NELL1Q92832 810 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 SMARCD1Q96GM5 515 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 SLITRK1Q96PX8 696 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 GSDMAQ96QA5 445 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 SLC22A12Q96S37 553 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 CYP2S1Q96SQ9 504 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 MED10Q9BTT4 135 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 GTPBP4Q9BZE4 634 aaKnown RBP7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 ZNF518BQ9C0D4 1074 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 SDCBP2Q9H190 292 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 HPS4Q9NQG7 708 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 RBM12Q9NTZ6 932 aaKnown RBP7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 DUS2Q9NX74 493 aaKnown RBP7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 GCNT4Q9P109 453 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 HOOK1Q9UJC3 728 aaKnown RBP7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 ARHGAP26Q9UNA1 814 aa7.2□□□□□ -1.26
CCDC88A-213ENST00000476903 ZNF840PA6NDX5 716 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 OTOL1A6NHN0 477 aaPredicted RBP7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 TRDMT1O14717 391 aaKnown RBP7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 CETN3O15182 167 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms