RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 SAC3D1A6NKF1 404 aa9.29□□□□□ -0.92
COPB1-202ENST00000439561 KCNK1O00180 336 aa9.29□□□□□ -0.92
COPB1-202ENST00000439561 FOXD2O60548 495 aaPredicted RBP9.29□□□□□ -0.92
COPB1-202ENST00000439561 SUPT20HL2P0C7V6 817 aa9.29□□□□□ -0.92
COPB1-202ENST00000439561 SPDYE6P0CI01 402 aa9.29□□□□□ -0.92
COPB1-202ENST00000439561 PIK3R1P27986 724 aa9.29□□□□□ -0.92
COPB1-202ENST00000439561 CCR3P51677 355 aa9.29□□□□□ -0.92
COPB1-202ENST00000439561 STAT5BP51692 787 aa9.29□□□□□ -0.92
COPB1-202ENST00000439561 NAGLUP54802 743 aa9.29□□□□□ -0.92
COPB1-202ENST00000439561 CA9Q16790 459 aa9.29□□□□□ -0.92
COPB1-202ENST00000439561 GOLGA7BQ2TAP0 167 aa9.29□□□□□ -0.92
COPB1-202ENST00000439561 SUPT20HL1Q3ZLR7 823 aa9.29□□□□□ -0.92
COPB1-202ENST00000439561 HSF5Q4G112 596 aaPredicted RBP9.29□□□□□ -0.92
COPB1-202ENST00000439561 GRAMD4Q6IC98 578 aa9.29□□□□□ -0.92
COPB1-202ENST00000439561 FAM183BPQ6ZVS7 135 aa9.29□□□□□ -0.92
COPB1-202ENST00000439561 KDELC2Q7Z4H8 507 aa9.29□□□□□ -0.92
COPB1-202ENST00000439561 FAM131BQ86XD5 332 aa9.29□□□□□ -0.92
COPB1-202ENST00000439561 DSELQ8IZU8 1212 aa9.29□□□□□ -0.92
COPB1-202ENST00000439561 OR6B3Q8NGW1 331 aa9.29□□□□□ -0.92
COPB1-202ENST00000439561 ACTRT2Q8TDY3 377 aa9.29□□□□□ -0.92
COPB1-202ENST00000439561 DDI1Q8WTU0 396 aa9.29□□□□□ -0.92
COPB1-202ENST00000439561 PDCD6IPQ8WUM4 868 aaKnown RBP9.29□□□□□ -0.92
COPB1-202ENST00000439561 MRPS26Q9BYN8 205 aaKnown RBP9.29□□□□□ -0.92
COPB1-202ENST00000439561 FRMD8Q9BZ67 464 aaPredicted RBP9.29□□□□□ -0.92
COPB1-202ENST00000439561 PAIP1Q9H074 479 aaKnown RBP9.29□□□□□ -0.92
COPB1-202ENST00000439561 RNF19AQ9NV58 838 aa9.29□□□□□ -0.92
COPB1-202ENST00000439561 COPG2Q9UBF2 871 aa9.29□□□□□ -0.92
COPB1-202ENST00000439561 PPP1R1BQ9UD71 204 aaPredicted RBP9.29□□□□□ -0.92
COPB1-202ENST00000439561 DMTF1Q9Y222 760 aa9.29□□□□□ -0.92
COPB1-202ENST00000439561 POLBP06746 335 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 ME2P23368 584 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 ABCD1P33897 745 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 PGGT1BP53609 377 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 ATXN1P54253 815 aaKnown RBP9.28□□□□□ -0.92
COPB1-202ENST00000439561 SLC12A2P55011 1212 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 CDH15P55291 814 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 PDAP1Q13442 181 aaKnown RBP9.28□□□□□ -0.92
COPB1-202ENST00000439561 CAPSQ13938 189 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 SEPT6Q14141 434 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 Q3C1V9 767 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 TEX44Q53QW1 395 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 BOLA3Q53S33 107 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 PRAMEF18Q5VWM3 479 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 SPATA6LQ8N4H0 392 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 TMEM176AQ96HP8 235 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 PIWIL1Q96J94 861 aaKnown RBP9.28□□□□□ -0.92
COPB1-202ENST00000439561 SDCBP2Q9H190 292 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 UBP1Q9NZI7 540 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 C6orf203Q9P0P8 240 aaPredicted RBP9.28□□□□□ -0.92
COPB1-202ENST00000439561 ZNF180Q9UJW8 692 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 TSPAN16Q9UKR8 245 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 PCDHGB4Q9UN71 923 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 CDYLQ9Y232 598 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 PCDHGB5Q9Y5G0 923 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 PCDHA11Q9Y5I1 949 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 SF3B1O75533 1304 aaKnown RBP eCLIP9.28□□□□□ -0.926e-6■■■■■ 77.9
COPB1-202ENST00000439561 PHGDHO43175 533 aaKnown RBP9.28□□□□□ -0.92
COPB1-202ENST00000439561 CCNT2O60583 730 aaKnown RBP9.28□□□□□ -0.92
COPB1-202ENST00000439561 PIGNO95427 931 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 TPH1P17752 444 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 RXRBP28702 533 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 CCR10P46092 362 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 ZNF143P52747 638 aaPredicted RBP9.28□□□□□ -0.92
COPB1-202ENST00000439561 AP3M2P53677 418 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 HMGCS2P54868 508 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 TPD52P55327 224 aaPredicted RBP9.28□□□□□ -0.92
COPB1-202ENST00000439561 NME5P56597 212 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 PHEXP78562 749 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 NME3Q13232 169 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 OLIG2Q13516 323 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 ATP1A4Q13733 1029 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 LPIN1Q14693 890 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 DGKDQ16760 1214 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 MBLAC2Q68D91 279 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 ACOT1Q86TX2 421 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 TRAPPC12Q8WVT3 735 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 EXT2Q93063 718 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 TWNKQ96RR1 684 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 EFHD1Q9BUP0 239 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 PORCNQ9H237 461 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 C1orf21Q9H246 121 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 ZNF277Q9NRM2 450 aaPredicted RBP9.28□□□□□ -0.92
COPB1-202ENST00000439561 RRN3Q9NYV6 651 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 FZD1Q9UP38 647 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 EFR3BQ9Y2G0 817 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 V9GYQ6 96 aa9.28□□□□□ -0.92
COPB1-202ENST00000439561 C3orf70A6NLC5 250 aaPredicted RBP9.27□□□□□ -0.92
COPB1-202ENST00000439561 ZBTB14O43829 449 aa9.27□□□□□ -0.92
COPB1-202ENST00000439561 CHRNGP07510 517 aa9.27□□□□□ -0.92
COPB1-202ENST00000439561 FGF3P11487 239 aaPredicted RBP9.27□□□□□ -0.92
COPB1-202ENST00000439561 SPRP35270 261 aaPredicted RBP9.27□□□□□ -0.92
COPB1-202ENST00000439561 CPOXP36551 454 aa9.27□□□□□ -0.92
COPB1-202ENST00000439561 ARL1P40616 181 aaPredicted RBP9.27□□□□□ -0.92
COPB1-202ENST00000439561 CASP2P42575 452 aa9.27□□□□□ -0.92
COPB1-202ENST00000439561 NR1H2P55055 460 aa9.27□□□□□ -0.92
COPB1-202ENST00000439561 USP10Q14694 798 aaKnown RBP9.27□□□□□ -0.92
COPB1-202ENST00000439561 SURF1Q15526 300 aa9.27□□□□□ -0.92
COPB1-202ENST00000439561 ATF7IP2Q5U623 682 aa9.27□□□□□ -0.92
COPB1-202ENST00000439561 RNF111Q6ZNA4 994 aa9.27□□□□□ -0.92
COPB1-202ENST00000439561 VSIG10LQ86VR7 867 aa9.27□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms