RNA–Protein interactions for RNA: ENST00000430976.5

PTPN4-203, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 4,154 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-203ENST00000430976 HMX3A6NHT5 357 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 GABRDO14764 452 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 NOBOXO60393 691 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 LILRB5O75023 590 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 TGM6O95932 706 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 TOP3BO95985 862 aaKnown RBP5.49□□□□□ -1.53
PTPN4-203ENST00000430976 IL1BP01584 269 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 CYC1P08574 325 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 LCP1P13796 627 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 RXRAP19793 462 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 FGFR3P22607 806 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 GPC1P35052 558 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 PCGF2P35227 344 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 FNTBP49356 437 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 STAT5BP51692 787 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 GBX2P52951 348 aaPredicted RBP5.49□□□□□ -1.53
PTPN4-203ENST00000430976 YWHAEP62258 255 aaKnown RBP5.49□□□□□ -1.53
PTPN4-203ENST00000430976 CYP24A1Q07973 514 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 TGM3Q08188 693 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 SLC39A14Q15043 492 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 ZNF423Q2M1K9 1284 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 TCTE1Q5JU00 501 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 TMEM31Q5JXX7 168 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 C6orf10Q5SRN2 563 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 MLIPQ5VWP3 458 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 SLFN12LQ6IEE8 588 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 DENND5AQ6IQ26 1287 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 UBE3BQ7Z3V4 1068 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 SPRED1Q7Z699 444 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 DDX53Q86TM3 631 aaKnown RBP5.49□□□□□ -1.53
PTPN4-203ENST00000430976 PRUNE1Q86TP1 453 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 FAM228AQ86W67 206 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 CATSPERDQ86XM0 798 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 TRMT44Q8IYL2 757 aaKnown RBP5.49□□□□□ -1.53
PTPN4-203ENST00000430976 SH2D3CQ8N5H7 860 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 GSTCDQ8NEC7 633 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 RAB7BQ96AH8 199 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 EME1Q96AY2 570 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 QKIQ96PU8 341 aaKnown RBP eCLIP5.49□□□□□ -1.535e-8■■■■■ 69
PTPN4-203ENST00000430976 DBNDD2Q9BQY9 259 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 THUMPD3Q9BV44 507 aaKnown RBP5.49□□□□□ -1.53
PTPN4-203ENST00000430976 STRA6Q9BX79 667 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 USP44Q9H0E7 712 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 POLR3FQ9H1D9 316 aaPredicted RBP5.49□□□□□ -1.53
PTPN4-203ENST00000430976 GGNBP2Q9H3C7 697 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 L2HGDHQ9H9P8 463 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 SIAEQ9HAT2 523 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 C11orf16Q9NQ32 467 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 SMARCAL1Q9NZC9 954 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 RABGEF1Q9UJ41 708 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 USP21Q9UK80 565 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 STAP1Q9ULZ2 295 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 EXOGQ9Y2C4 368 aaKnown RBP5.49□□□□□ -1.53
PTPN4-203ENST00000430976 PCDHGA7Q9Y5G6 932 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.49□□□□□ -1.53
PTPN4-203ENST00000430976 CFTRP13569 1480 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 ARAP1Q96P48 1450 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 FLT1P17948 1338 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 WDR33Q9C0J8 1336 aaKnown RBP5.49□□□□□ -1.53
PTPN4-203ENST00000430976 PDS5BQ9NTI5 1447 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 H3BM21 787 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 DAPK3O43293 454 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 HSPA12AO43301 675 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 SMAD6O43541 496 aaKnown RBP5.49□□□□□ -1.53
PTPN4-203ENST00000430976 TADA2AO75478 443 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 DAB1O75553 588 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 SERPINB7O75635 380 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 A1BGP04217 495 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 COL6A2P12110 1019 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 PTNP21246 168 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 RYKP34925 604 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 MAN2A2P49641 1150 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 HERVK_113P62684 666 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 ERVK-9P63128 1117 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 ERVK-24P63145 666 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 ATP8B2P98198 1209 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 BFSP2Q13515 415 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 PLCL1Q15111 1095 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 TAZQ16635 292 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 TAF1BQ53T94 588 aaPredicted RBP5.49□□□□□ -1.53
PTPN4-203ENST00000430976 SAPCD1Q5SSQ6 148 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 SPOUT1Q5T280 376 aaKnown RBP5.49□□□□□ -1.53
PTPN4-203ENST00000430976 MAML2Q8IZL2 1156 aaPredicted RBP5.49□□□□□ -1.53
PTPN4-203ENST00000430976 MAGEC3Q8TD91 643 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 SYTL5Q8TDW5 730 aaPredicted RBP5.49□□□□□ -1.53
PTPN4-203ENST00000430976 SLC20A1Q8WUM9 679 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 DNAJC9Q8WXX5 260 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 MFSD3Q96ES6 412 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 MSANTD3Q96H12 275 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 APOPT1Q96IL0 206 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 MAP6Q96JE9 813 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 NSMCE2Q96MF7 247 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 FEM1AQ9BSK4 669 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 IFT27Q9BW83 186 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 BEX2Q9BXY8 128 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 NDST4Q9H3R1 872 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 GOLPH3LQ9H4A5 285 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 CABP5Q9NP86 173 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 ARMC1Q9NVT9 282 aa5.49□□□□□ -1.53
PTPN4-203ENST00000430976 THUMPD1Q9NXG2 353 aaKnown RBP5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms