RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 RGPD3A6NKT7 1758 aaPredicted RBP13.27□□□□□ -0.29
PTCH1-207ENST00000429896 RGPD4Q7Z3J3 1758 aa13.27□□□□□ -0.29
PTCH1-207ENST00000429896 ZNF263O14978 683 aa13.27□□□□□ -0.29
PTCH1-207ENST00000429896 EEF1DP29692 281 aaKnown RBP13.27□□□□□ -0.29
PTCH1-207ENST00000429896 FNTAP49354 379 aa13.27□□□□□ -0.29
PTCH1-207ENST00000429896 FASTKD1Q53R41 847 aaKnown RBP13.27□□□□□ -0.29
PTCH1-207ENST00000429896 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.27□□□□□ -0.29
PTCH1-207ENST00000429896 JAMLQ86YT9 394 aa13.27□□□□□ -0.29
PTCH1-207ENST00000429896 IRF2BP1Q8IU81 584 aa13.27□□□□□ -0.29
PTCH1-207ENST00000429896 PPIL6Q8IXY8 311 aa13.27□□□□□ -0.29
PTCH1-207ENST00000429896 BLOC1S5Q8TDH9 187 aa13.27□□□□□ -0.29
PTCH1-207ENST00000429896 ZYG11BQ9C0D3 744 aa13.27□□□□□ -0.29
PTCH1-207ENST00000429896 CAPN6Q9Y6Q1 641 aa13.27□□□□□ -0.29
PTCH1-207ENST00000429896 SPAG7O75391 227 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 OCM2P0CE71 109 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 OCMP0CE72 109 aaPredicted RBP13.26□□□□□ -0.29
PTCH1-207ENST00000429896 HLA-DPA1P20036 260 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 ZRANB3Q5FWF4 1079 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 TDRD5Q8NAT2 981 aaKnown RBP13.26□□□□□ -0.29
PTCH1-207ENST00000429896 CALML6Q8TD86 181 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 E2F8A0AVK6 867 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 POLE2P56282 527 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 DAB2P98082 770 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 SMG8Q8ND04 991 aaKnown RBP13.26□□□□□ -0.29
PTCH1-207ENST00000429896 NRDE2Q9H7Z3 1164 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 RBM22Q9NW64 420 aaKnown RBP eCLIP13.26□□□□□ -0.29
PTCH1-207ENST00000429896 SMARCAL1Q9NZC9 954 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 CACNG4Q9UBN1 327 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 ZC3H7BQ9UGR2 993 aaKnown RBP13.26□□□□□ -0.29
PTCH1-207ENST00000429896 PPP1R37O75864 691 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 PCDH8O95206 1070 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 NR2C2P49116 596 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 CCDC157Q569K6 752 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 KRT80Q6KB66 452 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 KLHDC9Q8NEP7 349 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 KLHL29Q96CT2 875 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 CRLS1Q9UJA2 301 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 NEU2Q9Y3R4 380 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 STYXL1Q9Y6J8 313 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 TRDMT1O14717 391 aaKnown RBP13.26□□□□□ -0.29
PTCH1-207ENST00000429896 GRAMD1BQ3KR37 738 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 BRMS1LQ5PSV4 323 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 MEI1Q5TIA1 1274 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 PTPRN2Q92932 1015 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 SSC5DA1L4H1 1573 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 H0Y3Z8 333 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 ZSCAN9O15535 394 aaPredicted RBP13.26□□□□□ -0.29
PTCH1-207ENST00000429896 NFATC1O95644 943 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 ATG16L1Q676U5 607 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 FBXL18Q96ME1 805 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 LACRTQ9GZZ8 138 aa13.26□□□□□ -0.29
PTCH1-207ENST00000429896 MRPL42Q9Y6G3 142 aaKnown RBP13.26□□□□□ -0.29
PTCH1-207ENST00000429896 ZNF623O75123 536 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 E2F6O75461 281 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 SRRM1Q8IYB3 904 aaKnown RBP13.25□□□□□ -0.29
PTCH1-207ENST00000429896 LEMD2Q8NC56 503 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 CLUHO75153 1309 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 GALTP07902 379 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 TMC5Q6UXY8 1006 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 ZNF516Q92618 1163 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 SLC13A1Q9BZW2 595 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 CYLDQ9NQC7 956 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 MAN1C1Q9NR34 630 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 RBM12Q9NTZ6 932 aaKnown RBP13.25□□□□□ -0.29
PTCH1-207ENST00000429896 ARHGEF38Q9NXL2 777 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 PCDHGC3Q9UN70 934 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 CLCA2Q9UQC9 943 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 RBAK-RBAKDNI3L0D1 243 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 POLBP06746 335 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 RABGGTBP53611 331 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 FAM47EQ6ZV65 393 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 REXO1L1PQ8IX06 675 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 KCNV2Q8TDN2 545 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 FOPNLQ96NB1 174 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 FICDQ9BVA6 458 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 YIPF1Q9Y548 306 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 FAM95CA0A1B0GW59 222 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 KCNJ1P48048 391 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 PDE12Q6L8Q7 609 aaKnown RBP13.25□□□□□ -0.29
PTCH1-207ENST00000429896 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.25□□□□□ -0.29
PTCH1-207ENST00000429896 TAS1R3Q7RTX0 852 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 PPP1R16AQ96I34 528 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 ZFYVE19Q96K21 471 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 EGFL8Q99944 293 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 ANKRD31Q8N7Z5 1873 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 TARSL2A2RTX5 802 aaKnown RBP13.25□□□□□ -0.29
PTCH1-207ENST00000429896 C11orf74Q86VG3 221 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 ATG4AQ8WYN0 398 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 FRMD8Q9BZ67 464 aaPredicted RBP13.25□□□□□ -0.29
PTCH1-207ENST00000429896 CASS4Q9NQ75 786 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 NSMCE4AQ9NXX6 385 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 OGDHLQ9ULD0 1010 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 AKAP11Q9UKA4 1901 aa13.25□□□□□ -0.29
PTCH1-207ENST00000429896 NEDD8-MDP1E9PL57 170 aa13.24□□□□□ -0.29
PTCH1-207ENST00000429896 COPEO14579 308 aa13.24□□□□□ -0.29
PTCH1-207ENST00000429896 SOAT2O75908 522 aa13.24□□□□□ -0.29
PTCH1-207ENST00000429896 ZNF284Q2VY69 593 aa13.24□□□□□ -0.29
PTCH1-207ENST00000429896 IFNLR1Q8IU57 520 aaPredicted RBP13.24□□□□□ -0.29
PTCH1-207ENST00000429896 CCNYL1Q8N7R7 359 aa13.24□□□□□ -0.29
PTCH1-207ENST00000429896 KLHL23Q8NBE8 558 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms