RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 BGNP21810 368 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 NPY2RP49146 381 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 SEZ6Q53EL9 994 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 TMC5Q6UXY8 1006 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 ZFRQ96KR1 1074 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 ENTPD4Q9Y227 616 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 CRYL1Q9Y2S2 319 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 KCNQ2O43526 872 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 IGSF6O95976 241 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 TBX4P57082 545 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 ANKRD7Q92527 254 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 PANX3Q96QZ0 392 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 CDC42EP4Q9H3Q1 356 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 MAP10Q9P2G4 905 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 CROTQ9UKG9 612 aa13.08□□□□□ -0.32
CCDC88C-204ENST00000389857 GPR75-ASB3A0A0A6YYF3 556 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 MTRF1O75570 445 aaKnown RBP13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 GLT6D1Q7Z4J2 308 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 DHFR2Q86XF0 187 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 CCDC33Q8N5R6 958 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 TAS2R13Q9NYV9 303 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 DAPK2Q9UIK4 370 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 TMCO1Q9UM00 188 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 SIK3Q9Y2K2 1263 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 PCDHB5Q9Y5E4 795 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 H3BN98 237 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 SLC37A4O43826 429 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 FGRP09769 529 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 NPTX2P47972 431 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 IL2P60568 153 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 NAB1Q13506 487 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 ZFP1Q6P2D0 407 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 KCNMB4Q86W47 210 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 NEK6Q9HC98 313 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 LRRC4BQ9NT99 713 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 RBM22Q9NW64 420 aaKnown RBP eCLIP13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 SPG21Q9NZD8 308 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 TRHDEQ9UKU6 1024 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 CASZ1Q86V15 1759 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 HS6ST1O60243 411 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 STX11O75558 287 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 DGUOKQ16854 277 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 FGD3Q5JSP0 725 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 RETSATQ6NUM9 610 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 NOA1Q8NC60 698 aaKnown RBP13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 COQ7Q99807 217 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 CISHQ9NSE2 258 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 RAMP2O60895 175 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 PROSCO94903 275 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 MAP3K6O95382 1288 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 HOXC6P09630 235 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 ZCCHC18P0CG32 403 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 UMPSP11172 480 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 WEE1P30291 646 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 FASTKQ14296 549 aaKnown RBP13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 FBXO33Q7Z6M2 555 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 RXFP2Q8WXD0 754 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 PCDH9Q9HC56 1237 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 A0A087X0T9 212 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 BCLAF3A2AJT9 711 aaKnown RBP13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 SEC22BO75396 215 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 HK2P52789 917 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 IZUMO2Q6UXV1 221 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 ZNF605Q86T29 641 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 DEFB107AQ8IZN7 70 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 SMARCD1Q96GM5 515 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 TBL1YQ9BQ87 522 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 ZNF624Q9P2J8 865 aaPredicted RBP13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 POLR2LP62875 67 aaKnown RBP13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 POU6F1Q14863 301 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 AGMOQ6ZNB7 445 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 RORBQ92753 470 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 GPATCH2LQ9NWQ4 482 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 DDX43Q9NXZ2 648 aaKnown RBP13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 NDOR1Q9UHB4 597 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 FBXO10Q9UK96 956 aa13.07□□□□□ -0.32
CCDC88C-204ENST00000389857 CHD1O14646 1710 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 ITSN1Q15811 1721 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 CHURC1-FNTBB4DL54 471 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 CAMTA2O94983 1202 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 HIST1H2ABP04908 130 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 OR1E1P30953 314 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 CLCN3P51790 818 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 FBXO47Q5MNV8 452 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 HIST3H2AQ7L7L0 130 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 MYCBPAPQ8TBZ2 947 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 HIST1H2ACQ93077 130 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 STARD7Q9NQZ5 370 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 PXMP2Q9NR77 195 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 PRAMEF18Q5VWM3 479 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 SLC47A2Q86VL8 602 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 CSGALNACT1Q8TDX6 532 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 SEPHS2Q99611 448 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 APOL2Q9BQE5 337 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 CD248Q9HCU0 757 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 BARX2Q9UMQ3 279 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 SREBF1P36956 1147 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 TRAF3Q13114 568 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 GRB10Q13322 594 aa13.06□□□□□ -0.32
CCDC88C-204ENST00000389857 PAGE2BQ5JRK9 111 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms