RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 SETD3Q86TU7 594 aaPredicted RBP6.69□□□□□ -1.34
SMC1A-202ENST00000375340 TTC30BQ8N4P2 665 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 ANKRD27Q96NW4 1050 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 HBS1LQ9Y450 684 aaKnown RBP6.69□□□□□ -1.34
SMC1A-202ENST00000375340 NFS1Q9Y697 457 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 HEATR9A2RTY3 570 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 PAEPP09466 180 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 CETPP11597 493 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 USP4Q13107 963 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 ZNF470Q6ECI4 717 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 MFN1Q8IWA4 741 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 CENPLQ8N0S6 344 aaPredicted RBP6.69□□□□□ -1.34
SMC1A-202ENST00000375340 DEFB106AQ8N104 65 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 TBCBQ99426 244 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 CINPQ9BW66 212 aaPredicted RBP6.69□□□□□ -1.34
SMC1A-202ENST00000375340 HES2Q9Y543 173 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 ZNF536O15090 1300 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 UBDO15205 165 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 SNAPC2Q13487 334 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 ZNF484Q5JVG2 852 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 XYLT1Q86Y38 959 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 JADE3Q92613 823 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 ZNF333Q96JL9 665 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 LPIN3Q9BQK8 851 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 NMUR2Q9GZQ4 415 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 SCUBE2Q9NQ36 999 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 A1CFQ9NQ94 594 aaKnown RBP6.69□□□□□ -1.34
SMC1A-202ENST00000375340 TMEM59LQ9UK28 342 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 CHKBQ9Y259 395 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 ODC1P11926 461 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 ITGB6P18564 788 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 GEMP55040 296 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 POU4F1Q01851 419 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 LAMC2Q13753 1193 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 METTL7BQ6UX53 244 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 SAMD3Q8N6K7 520 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 GPRC5AQ8NFJ5 357 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 KCTD15Q96SI1 283 aaPredicted RBP6.69□□□□□ -1.34
SMC1A-202ENST00000375340 OMDQ99983 421 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 DENND2DQ9H6A0 471 aaPredicted RBP6.69□□□□□ -1.34
SMC1A-202ENST00000375340 NRDE2Q9H7Z3 1164 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 RABGEF1Q9UJ41 708 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 WASF2Q9Y6W5 498 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 TCRBV7S3A2A0A539 114 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 HNRNPRO43390 633 aaKnown RBP6.69□□□□□ -1.34
SMC1A-202ENST00000375340 KATNA1O75449 491 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 EIF4BP23588 611 aaKnown RBP6.69□□□□□ -1.34
SMC1A-202ENST00000375340 TWF1Q12792 350 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 WLSQ5T9L3 541 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 CLNKQ7Z7G1 428 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 FIG4Q92562 907 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 MRPS26Q9BYN8 205 aaKnown RBP6.69□□□□□ -1.34
SMC1A-202ENST00000375340 WDR41Q9HAD4 459 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 GPAMQ9HCL2 828 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 CCDC167Q9P0B6 97 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 ANKRD6Q9Y2G4 727 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 PLIN4Q96Q06 1357 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 C17orf102A2RUQ5 167 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 ERI2A8K979 691 aaKnown RBP6.69□□□□□ -1.34
SMC1A-202ENST00000375340 ZBTB17Q13105 803 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 DMC1Q14565 340 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 TATDN1Q6P1N9 297 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 ZBTB49Q6ZSB9 765 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 NPAS2Q99743 824 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 SIKE1Q9BRV8 207 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 ACSS3Q9H6R3 686 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 AP3B1O00203 1094 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 GSC2O15499 205 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 ENDOD1O94919 500 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 ALBP02768 609 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 CHRM3P20309 590 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 GRK2P25098 689 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 GRIA4P48058 902 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 PPP3CCP48454 512 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 UBE3AQ05086 875 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 R3HDM1Q15032 1099 aaKnown RBP6.69□□□□□ -1.34
SMC1A-202ENST00000375340 PPM1JQ5JR12 505 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 C6orf52Q5T4I8 152 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 SH3PXD2AQ5TCZ1 1133 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 TMC7Q7Z402 723 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 CERKQ8TCT0 537 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 CALML6Q8TD86 181 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 DDI1Q8WTU0 396 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 CPT1BQ92523 772 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 SYNDIG1LA6NDD5 238 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 CLDN5O00501 218 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 PPARGP37231 505 aaPredicted RBP6.69□□□□□ -1.34
SMC1A-202ENST00000375340 NR2C2P49116 596 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 NRLP54845 237 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 GLMNQ92990 594 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 PPP1R10Q96QC0 940 aaKnown RBP6.69□□□□□ -1.34
SMC1A-202ENST00000375340 GORASP1Q9BQQ3 440 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 NMRAL1Q9HBL8 299 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 UBQLN1Q9UMX0 589 aaKnown RBP6.69□□□□□ -1.34
SMC1A-202ENST00000375340 SPATA31A6Q5VVP1 1343 aa6.69□□□□□ -1.34
SMC1A-202ENST00000375340 TRDMT1O14717 391 aaKnown RBP6.68□□□□□ -1.34
SMC1A-202ENST00000375340 ANXA9O76027 345 aa6.68□□□□□ -1.34
SMC1A-202ENST00000375340 PIGNO95427 931 aa6.68□□□□□ -1.34
SMC1A-202ENST00000375340 CDKN2BP42772 138 aa6.68□□□□□ -1.34
SMC1A-202ENST00000375340 RPL14P50914 215 aaKnown RBP6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms