RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 PAK6Q9NQU5 681 aaPredicted RBP12.87□□□□□ -0.35
COL6A3-203ENST00000353578 RAD18Q9NS91 495 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 PCDHGC5Q9Y5F6 944 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 FRMPD4Q14CM0 1322 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 SLC2A3P11169 496 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 USP46P62068 366 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 SWI5Q1ZZU3 235 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 GALNT18Q6P9A2 607 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 EMC1Q8N766 993 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 DPF3Q92784 378 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 KCNN2Q9H2S1 579 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 TRPV5Q9NQA5 729 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 CHORDC1Q9UHD1 332 aaPredicted RBP12.87□□□□□ -0.35
COL6A3-203ENST00000353578 MAGI2Q86UL8 1455 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 INO80B-WBP1J3KQ70 363 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 VPS26AO75436 327 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 PERM1Q5SV97 790 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 TWF2Q6IBS0 349 aaKnown RBP12.87□□□□□ -0.35
COL6A3-203ENST00000353578 SMYD1Q8NB12 490 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 SLC38A2Q96QD8 506 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 WDR70Q9NW82 654 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 RBP3P10745 1247 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 GPC3P51654 580 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 RNF135Q8IUD6 432 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 SLC39A10Q9ULF5 831 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 PREX2Q70Z35 1606 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 ILVBLA1L0T0 632 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 SULT1B1O43704 296 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 LRIG2O94898 1065 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 TMEM17Q86X19 198 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 MPP5Q8N3R9 675 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 TUBA1CQ9BQE3 449 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 HTATIP2Q9BUP3 242 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 SLC22A4Q9H015 551 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 MGAT4AQ9UM21 535 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.87□□□□□ -0.35
COL6A3-203ENST00000353578 PKP3Q9Y446 797 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 TRIM38O00635 465 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 PRPF4O43172 522 aaKnown RBP eCLIP12.86□□□□□ -0.35
COL6A3-203ENST00000353578 ZNF682O95780 498 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 FBXW4P57775 412 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 KCNJ2P63252 427 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 SKIV2LQ15477 1246 aaKnown RBP12.86□□□□□ -0.35
COL6A3-203ENST00000353578 STK32CQ86UX6 486 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 KCTD4Q8WVF5 259 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 REPS1Q96D71 796 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 TUFMP49411 452 aaKnown RBP12.86□□□□□ -0.35
COL6A3-203ENST00000353578 RPL14P50914 215 aaKnown RBP12.86□□□□□ -0.35
COL6A3-203ENST00000353578 TXNRD1Q16881 649 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 AGKQ53H12 422 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 STRIP1Q5VSL9 837 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 SLC25A24Q6NUK1 477 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 ZNF276Q8N554 614 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 TBCBQ99426 244 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 FUCA2Q9BTY2 467 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 PCDH12Q9NPG4 1184 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 PNPLA7Q6ZV29 1317 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 CLEC16AQ2KHT3 1053 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 FBXO25Q8TCJ0 367 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 UNKQ9C0B0 810 aaKnown RBP12.86□□□□□ -0.35
COL6A3-203ENST00000353578 RPS6KL1Q9Y6S9 549 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 TPST1O60507 370 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 PGK1P00558 417 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 HPCAL1P37235 193 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 KLHDC7AQ5VTJ3 777 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 RNF219Q5W0B1 726 aaPredicted RBP12.86□□□□□ -0.35
COL6A3-203ENST00000353578 UNC5CLQ8IV45 518 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 CELF4Q9BZC1 486 aaKnown RBP12.86□□□□□ -0.35
COL6A3-203ENST00000353578 MYL9P24844 172 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 BHLHB9Q6PI77 547 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 FBXO36Q8NEA4 188 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 ZNF671Q8TAW3 534 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 AKAP1Q92667 903 aaKnown RBP eCLIP12.86□□□□□ -0.35
COL6A3-203ENST00000353578 HIPK3Q9H422 1215 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 IL1RL2Q9HB29 575 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 AGPAT5Q9NUQ2 364 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 TULP3O75386 442 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 FMR1Q06787 632 aaKnown RBP eCLIP12.86□□□□□ -0.35
COL6A3-203ENST00000353578 USP43Q70EL4 1123 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 DGCR6LQ9BY27 220 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 PADI4Q9UM07 663 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 ITM2BQ9Y287 266 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 FARP1Q9Y4F1 1045 aaPredicted RBP12.86□□□□□ -0.35
COL6A3-203ENST00000353578 A0A087X1B8 175 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 TRIM64A6NGJ6 449 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 TRIM64BA6NI03 449 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 CDK9P50750 372 aaKnown RBP12.86□□□□□ -0.35
COL6A3-203ENST00000353578 ZSWIM5Q9P217 1185 aa12.86□□□□□ -0.35
COL6A3-203ENST00000353578 PROCP04070 461 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 FDX1P10109 184 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 PAX3P23760 479 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 CAMK1Q14012 370 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 CDK20Q8IZL9 346 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 MAGEL2Q9UJ55 1249 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 DHRS12A0PJE2 317 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 LARGE1O95461 756 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 ZBTB11O95625 1053 aaPredicted RBP12.85□□□□□ -0.35
COL6A3-203ENST00000353578 RALAP11233 206 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 KLRC1P26715 233 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 GTF2H3Q13889 308 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms