RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 AFG1LQ8WV93 481 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 PIGSQ96S52 555 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 KRTAP4-11Q9BYQ6 195 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 LDHAL6BQ9BYZ2 381 aaPredicted RBP3.78□□□□□ -1.8
HMGB1-201ENST00000326004 TRIM2Q9C040 744 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 R3HDMLQ9H3Y0 253 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 ABHD16BQ9H3Z7 469 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 SFXN1Q9H9B4 322 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 PRDM16Q9HAZ2 1276 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 ARL8BQ9NVJ2 186 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 ASNSD1Q9NWL6 643 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 HEMK1Q9Y5R4 338 aaPredicted RBP3.78□□□□□ -1.8
HMGB1-201ENST00000326004 TISP43B9A030 160 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 PRRT4C9JH25 899 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 USP12O75317 370 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 KRT38O76015 456 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 SGPL1O95470 568 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 PRKCGP05129 697 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 ENO1P06733 434 aaKnown RBP3.77□□□□□ -1.81
HMGB1-201ENST00000326004 NHLRC4P0CG21 123 aaPredicted RBP3.77□□□□□ -1.81
HMGB1-201ENST00000326004 CYP2A6P11509 494 aaPredicted RBP3.77□□□□□ -1.81
HMGB1-201ENST00000326004 TACR3P29371 465 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 STAT6P42226 847 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 VPS41P49754 854 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 RBM5P52756 815 aaKnown RBP eCLIP3.77□□□□□ -1.81
HMGB1-201ENST00000326004 RCAN1P53805 252 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 INHBEP58166 350 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 TFF2Q03403 129 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 DMWDQ09019 674 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 SLC14A1Q13336 389 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 GAB1Q13480 694 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 DCTN1Q14203 1278 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 TAF12Q16514 161 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 ZNF788Q6ZQV5 615 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 SYT13Q7L8C5 426 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 SUGP1Q8IWZ8 645 aaKnown RBP3.77□□□□□ -1.81
HMGB1-201ENST00000326004 TMEM57Q8N5G2 664 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 PTGR2Q8N8N7 351 aaPredicted RBP3.77□□□□□ -1.81
HMGB1-201ENST00000326004 FSIP1Q8NA03 581 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 CSGALNACT1Q8TDX6 532 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 ZG16BQ96DA0 208 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 ZNF764Q96H86 408 aaPredicted RBP3.77□□□□□ -1.81
HMGB1-201ENST00000326004 UBXN10Q96LJ8 280 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 HTATIP2Q9BUP3 242 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 NOD2Q9HC29 1040 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 PDE11AQ9HCR9 933 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 ERVK-5Q9HDB9 667 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 KCND3Q9UK17 655 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 GTF2A1LQ9UNN4 478 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 DERAQ9Y315 318 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 PCDHA10Q9Y5I2 948 aa3.77□□□□□ -1.81
HMGB1-201ENST00000326004 COPG1Q9Y678 874 aaKnown RBP3.77□□□□□ -1.81
HMGB1-201ENST00000326004 AGAP5A6NIR3 686 aa3.76□□□□□ -1.81
HMGB1-201ENST00000326004 SAC3D1A6NKF1 404 aa3.76□□□□□ -1.81
HMGB1-201ENST00000326004 EIF3FO00303 357 aaPredicted RBP3.76□□□□□ -1.81
HMGB1-201ENST00000326004 HEXIM1O94992 359 aaKnown RBP3.76□□□□□ -1.81
HMGB1-201ENST00000326004 CYP2D6P10635 497 aa3.76□□□□□ -1.81
HMGB1-201ENST00000326004 ZNF84P51523 738 aa3.76□□□□□ -1.81
HMGB1-201ENST00000326004 SLC37A1P57057 533 aa3.76□□□□□ -1.81
HMGB1-201ENST00000326004 PROK1P58294 105 aa3.76□□□□□ -1.81
HMGB1-201ENST00000326004 KPNB1Q14974 876 aaKnown RBP3.76□□□□□ -1.81
HMGB1-201ENST00000326004 GPR162Q16538 588 aa3.76□□□□□ -1.81
HMGB1-201ENST00000326004 FAM110CQ1W6H9 321 aa3.76□□□□□ -1.81
HMGB1-201ENST00000326004 UEVLDQ8IX04 471 aa3.76□□□□□ -1.81
HMGB1-201ENST00000326004 ENDOVQ8N8Q3 282 aaKnown RBP3.76□□□□□ -1.81
HMGB1-201ENST00000326004 C8orf58Q8NAV2 365 aa3.76□□□□□ -1.81
HMGB1-201ENST00000326004 USP38Q8NB14 1042 aa3.76□□□□□ -1.81
HMGB1-201ENST00000326004 CELF1Q92879 486 aaKnown RBP3.76□□□□□ -1.81
HMGB1-201ENST00000326004 USP13Q92995 863 aaPredicted RBP3.76□□□□□ -1.81
HMGB1-201ENST00000326004 RILPL2Q969X0 211 aa3.76□□□□□ -1.81
HMGB1-201ENST00000326004 KTI12Q96EK9 354 aaPredicted RBP3.76□□□□□ -1.81
HMGB1-201ENST00000326004 SEMA4CQ9C0C4 833 aa3.76□□□□□ -1.81
HMGB1-201ENST00000326004 CHODLQ9H9P2 273 aa3.76□□□□□ -1.81
HMGB1-201ENST00000326004 PI4KBQ9UBF8 816 aa3.76□□□□□ -1.81
HMGB1-201ENST00000326004 LZTS1Q9Y250 596 aa3.76□□□□□ -1.81
HMGB1-201ENST00000326004 B3GNT3Q9Y2A9 372 aa3.76□□□□□ -1.81
HMGB1-201ENST00000326004 LRRFIP2Q9Y608 721 aaKnown RBP3.76□□□□□ -1.81
HMGB1-201ENST00000326004 EMSYQ7Z589 1322 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 CCDC189A1A4V9 331 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 C16orf96A6NNT2 1141 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 CNTN5O94779 1100 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 KAT7O95251 611 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 CYP21A2P08686 494 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 CNPP09543 421 aaKnown RBP3.75□□□□□ -1.81
HMGB1-201ENST00000326004 TNNT1P13805 278 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 AKR1A1P14550 325 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 RXRAP19793 462 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 TGM2P21980 687 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 CERS1P27544 350 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 PNPLA4P41247 253 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 MAPK9P45984 424 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 HSF1Q00613 529 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 FOXF2Q12947 444 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 PDCLQ13371 301 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 ANKRD1Q15327 319 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 SMN1Q16637 294 aaKnown RBP3.75□□□□□ -1.81
HMGB1-201ENST00000326004 CTXN3Q4LDR2 81 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 TMEM119Q4V9L6 283 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 AWAT1Q58HT5 328 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 RFX6Q8HWS3 928 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms