RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 DEPDC7Q96QD5 511 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 KATNAL1Q9BW62 490 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 RIOX1Q9H6W3 641 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 NMRK2Q9NPI5 230 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 IPPQ9Y573 584 aa17.73■□□□□ 0.43
SYNPO-201ENST00000307662 ADCY6O43306 1168 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 NPY2RP49146 381 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 DRG2P55039 364 aaKnown RBP17.72■□□□□ 0.43
SYNPO-201ENST00000307662 CHST13Q8NET6 341 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 POLE3Q9NRF9 147 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 TKTP29401 623 aaKnown RBP17.72■□□□□ 0.43
SYNPO-201ENST00000307662 NUP62P37198 522 aaPredicted RBP17.72■□□□□ 0.43
SYNPO-201ENST00000307662 TOP3AQ13472 1001 aaPredicted RBP17.72■□□□□ 0.43
SYNPO-201ENST00000307662 PARP6Q2NL67 630 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 TMEM63BQ5T3F8 832 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 WDR59Q6PJI9 974 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 PTAR1Q7Z6K3 402 aaPredicted RBP17.72■□□□□ 0.43
SYNPO-201ENST00000307662 ITFG1Q8TB96 612 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 RPRD1AQ96P16 312 aaPredicted RBP17.72■□□□□ 0.43
SYNPO-201ENST00000307662 MID1IP1Q9NPA3 183 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 MGAT4DA6NG13 374 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 FBXO21O94952 628 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 CAPN1P07384 714 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 NR2C2P49116 596 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 CCNG1P51959 295 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 MGAT5BQ3V5L5 792 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 AADACL2Q6P093 401 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 CAPSLQ8WWF8 208 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 ASZ1Q8WWH4 475 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 SEMA4DQ92854 862 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 MCRS1Q96EZ8 462 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 PRDM5Q9NQX1 630 aaPredicted RBP17.72■□□□□ 0.43
SYNPO-201ENST00000307662 UBP1Q9NZI7 540 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 RNF181Q9P0P0 153 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 TK2O00142 265 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 MSH3P20585 1137 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 C4orf19Q8IY42 314 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 PLEKHG4BQ96PX9 1271 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 CLPBQ9H078 707 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 PDGFCQ9NRA1 345 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 RSL24D1Q9UHA3 163 aaKnown RBP17.72■□□□□ 0.43
SYNPO-201ENST00000307662 ABT1Q9ULW3 272 aaKnown RBP17.72■□□□□ 0.43
SYNPO-201ENST00000307662 SPATA31A6Q5VVP1 1343 aa17.72■□□□□ 0.43
SYNPO-201ENST00000307662 TULP2O00295 520 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 LRPAP1P30533 357 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 AMPD2Q01433 879 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 ZNF57Q68EA5 555 aaPredicted RBP17.71■□□□□ 0.43
SYNPO-201ENST00000307662 FNDC5Q8NAU1 212 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 ACOX2Q99424 681 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 ANAPC2Q9UJX6 822 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 APOC4-APOC2K7ER74 178 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 APOC2P02655 101 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 ILF2Q12905 390 aaKnown RBP17.71■□□□□ 0.43
SYNPO-201ENST00000307662 EPS8Q12929 822 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 TTC30AQ86WT1 665 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 KRT78Q8N1N4 520 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 ATXN10Q9UBB4 475 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 ENOPH1Q9UHY7 261 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 RCCD1A6NED2 376 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 TMEM114B3SHH9 223 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 CYP2C9P11712 490 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 POU6F1Q14863 301 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 TSNQ15631 228 aaKnown RBP17.71■□□□□ 0.43
SYNPO-201ENST00000307662 C11orf96Q7Z7L8 435 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 CYP4Z2PQ8N1L4 340 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 ELOVL6Q9H5J4 265 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 CHKBQ9Y259 395 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 PREX1Q8TCU6 1659 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 FAM220BPB1ANY3 271 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 CTSHP09668 335 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 COX4I1P13073 169 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 MSLNQ13421 630 aaPredicted RBP17.71■□□□□ 0.43
SYNPO-201ENST00000307662 DUPD1Q68J44 220 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 FAM126BQ8IXS8 530 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 B3GALNT2Q8NCR0 500 aa17.71■□□□□ 0.43
SYNPO-201ENST00000307662 DYNC1LI2O43237 492 aaPredicted RBP17.71■□□□□ 0.42
SYNPO-201ENST00000307662 PIGNO95427 931 aa17.71■□□□□ 0.42
SYNPO-201ENST00000307662 RXRGP48443 463 aa17.71■□□□□ 0.42
SYNPO-201ENST00000307662 TAB1Q15750 504 aa17.71■□□□□ 0.42
SYNPO-201ENST00000307662 PCDH20Q8N6Y1 951 aaKnown RBP17.71■□□□□ 0.42
SYNPO-201ENST00000307662 POMKQ9H5K3 350 aa17.71■□□□□ 0.42
SYNPO-201ENST00000307662 XPNPEP3Q9NQH7 507 aa17.71■□□□□ 0.42
SYNPO-201ENST00000307662 BLOC1S4Q9NUP1 217 aa17.71■□□□□ 0.42
SYNPO-201ENST00000307662 AK5Q9Y6K8 562 aa17.71■□□□□ 0.42
SYNPO-201ENST00000307662 MEGF6O75095 1541 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 CBFA2T3O75081 653 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 GSTM1P09488 218 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 ODC1P11926 461 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 CASP7P55210 303 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 ITGA1P56199 1179 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 AAGABQ6PD74 315 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 NECAB2Q7Z6G3 386 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 TTC7BQ86TV6 843 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 FBXO39Q8N4B4 442 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 MAGEC3Q8TD91 643 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 ACTRT2Q8TDY3 377 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 KLHL31Q9H511 634 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 NEURL4Q96JN8 1562 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 TRIM43BA6NCK2 446 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 CD3EAPO15446 510 aaKnown RBP17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms