RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 PTDSS1P48651 473 aaKnown RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 TPSAB1Q15661 275 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 C12orf60Q5U649 245 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 BBS12Q6ZW61 710 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 MPP5Q8N3R9 675 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 IPCEF1Q8WWN9 437 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 TCF12Q99081 682 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 ECSITQ9BQ95 431 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 RPS6KA6Q9UK32 745 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 GPC6Q9Y625 555 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 SLC30A1Q9Y6M5 507 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 GSG1L2A8MUP6 293 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 TADA2AO75478 443 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 TRMUO75648 421 aaKnown RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 IL12RB1P42701 662 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 GNA13Q14344 377 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 C2CD6Q53TS8 623 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 MFSD14BQ5SR56 506 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 ZFP28Q8NHY6 868 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 WDR36Q8NI36 951 aaKnown RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 FEZF2Q8TBJ5 459 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 PEX13Q92968 403 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 VPS28Q9UK41 221 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 ABT1Q9ULW3 272 aaKnown RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 SIK3Q9Y2K2 1263 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 ROBO2Q9HCK4 1378 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 H3BUI4 141 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 TRIM38O00635 465 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 SRGAP2O75044 1071 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 ATP9AO75110 1047 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 COBLO75128 1261 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 SASH3O75995 380 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 GNA15P30679 374 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 NME5P56597 212 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 FMR1Q06787 632 aaKnown RBP eCLIP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 CHRNDQ07001 517 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 GRIK3Q13003 919 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 TXNRD1Q16881 649 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 MZT2AQ6P582 158 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 MSANTD1Q6ZTZ1 278 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 TUBB1Q9H4B7 451 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 SENP2Q9HC62 589 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 A3GALT2U3KPV4 340 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 PHF20L1A8MW92 1017 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 GNPATO15228 680 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 SREBF1P36956 1147 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 GRAPQ13588 217 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 SLC5A9Q2M3M2 681 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 DCAF4L1Q3SXM0 396 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 ANGEL2Q5VTE6 544 aaKnown RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 MRNIPQ6NTE8 343 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 CAPN12Q6ZSI9 719 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 LRRC8DQ7L1W4 858 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 PRPF39Q86UA1 669 aaKnown RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 CPXCR1Q8N123 301 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 GRAPLQ8TC17 118 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 NSUN6Q8TEA1 469 aaKnown RBP5.36□□□□□ -1.55
SCN1A-201ENST00000303395 FAM149B1Q96BN6 582 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 STK32BQ9NY57 414 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 SPATA2Q9UM82 520 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 RTTNQ86VV8 2226 aa5.36□□□□□ -1.55
SCN1A-201ENST00000303395 PDZK1P1A8MUH7 402 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 NFIBO00712 420 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 TMEM127O75204 238 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 SMNDC1O75940 238 aaKnown RBP eCLIP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 SCGNO76038 276 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 C6orf222P0C671 652 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 VDRP11473 427 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 KLRC1P26715 233 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 TPP2P29144 1249 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 ALDH5A1P51649 535 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 ITGA8P53708 1063 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 FAXCQ5TGI0 409 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 CCDC185Q8N715 623 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 MLPHQ9BV36 600 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 XPO7Q9UIA9 1087 aaKnown RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 H0YIN7 160 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 TEX46H3BTG2 121 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 DDX3XO00571 662 aaKnown RBP eCLIP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 BMP10O95393 424 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 PDHA1P08559 390 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 RARBP10826 455 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 VAV1P15498 845 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 GABRB2P47870 512 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 ST8SIA6P61647 398 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 ERVK-9P63128 1117 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 C11orf91Q3C1V1 193 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 TBC1D25Q3MII6 688 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 INO80DQ53TQ3 878 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 C6orf89Q6UWU4 347 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 TRABD2AQ86V40 505 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 SPICE1Q8N0Z3 855 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 YME1L1Q96TA2 773 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 CGREF1Q99674 301 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 THTPAQ9BU02 230 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 DMGDHQ9UI17 866 aaKnown RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 PCDHA10Q9Y5I2 948 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 KIF28PB7ZC32 967 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 K7ERI5 159 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 C8BP07358 591 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms