RNA–Protein interactions for RNA: ENST00000223084.7

LSM5-201, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM5, Length 1,295 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-201ENST00000223084 ARCQ7LC44 396 aa13.13□□□□□ -0.31
LSM5-201ENST00000223084 C14orf80Q86SX3 495 aa13.13□□□□□ -0.31
LSM5-201ENST00000223084 CIR1Q86X95 450 aaPredicted RBP13.13□□□□□ -0.31
LSM5-201ENST00000223084 GAS2L3Q86XJ1 694 aa13.13□□□□□ -0.31
LSM5-201ENST00000223084 HJURPQ8NCD3 748 aaPredicted RBP13.13□□□□□ -0.31
LSM5-201ENST00000223084 C3orf20Q8ND61 904 aa13.13□□□□□ -0.31
LSM5-201ENST00000223084 SORCS1Q8WY21 1168 aa13.13□□□□□ -0.31
LSM5-201ENST00000223084 PGAP3Q96FM1 320 aaPredicted RBP13.13□□□□□ -0.31
LSM5-201ENST00000223084 PRMT1Q99873 361 aaKnown RBP13.13□□□□□ -0.31
LSM5-201ENST00000223084 SLC2A11Q9BYW1 496 aa13.13□□□□□ -0.31
LSM5-201ENST00000223084 TKTL2Q9H0I9 626 aa13.13□□□□□ -0.31
LSM5-201ENST00000223084 WDCPQ9H6R7 721 aa13.13□□□□□ -0.31
LSM5-201ENST00000223084 ARHGEF38Q9NXL2 777 aa13.13□□□□□ -0.31
LSM5-201ENST00000223084 MMP17Q9ULZ9 603 aa13.13□□□□□ -0.31
LSM5-201ENST00000223084 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.13□□□□□ -0.315e-7■■□□□ 14.2
LSM5-201ENST00000223084 HS3ST4Q9Y661 456 aa13.13□□□□□ -0.31
LSM5-201ENST00000223084 C2CD4BA6NLJ0 364 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 SIGLEC16A6NMB1 481 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 WASH3PC4AMC7 463 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 F5H5T6 163 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 PAGE1O75459 146 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 F9P00740 461 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 FTLP02792 175 aaPredicted RBP13.12□□□□□ -0.31
LSM5-201ENST00000223084 HLA-FP30511 346 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 RDXP35241 583 aaKnown RBP13.12□□□□□ -0.31
LSM5-201ENST00000223084 RFC1P35251 1148 aaPredicted RBP13.12□□□□□ -0.31
LSM5-201ENST00000223084 IRAK1P51617 712 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 SRSF5Q13243 272 aaKnown RBP13.12□□□□□ -0.31
LSM5-201ENST00000223084 AUHQ13825 339 aaKnown RBP13.12□□□□□ -0.31
LSM5-201ENST00000223084 CRY1Q16526 586 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 MPP7Q5T2T1 576 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 RNF43Q68DV7 783 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 SPECC1LQ69YQ0 1117 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 FBXL22Q6P050 247 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 DNAJC24Q6P3W2 148 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 WDR59Q6PJI9 974 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 SND1Q7KZF4 910 aaKnown RBP eCLIP13.12□□□□□ -0.31
LSM5-201ENST00000223084 BNIPLQ7Z465 357 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 ANKS1BQ7Z6G8 1248 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 FAM131BQ86XD5 332 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 VSTM4Q8IW00 320 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 CARNMT1Q8N4J0 409 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 ZBTB44Q8NCP5 570 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 ATRIPQ8WXE1 791 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 SYN2Q92777 582 aaPredicted RBP13.12□□□□□ -0.31
LSM5-201ENST00000223084 IGSF8Q969P0 613 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 IQCDQ96DY2 449 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.12□□□□□ -0.31
LSM5-201ENST00000223084 SIK2Q9H0K1 926 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 ABCB8Q9NUT2 735 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 STARD13Q9Y3M8 1113 aa13.12□□□□□ -0.31
LSM5-201ENST00000223084 VPS13AQ96RL7 3174 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 LILRB5O75023 590 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 SERPING1P05155 500 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 PABPC1P11940 636 aaKnown RBP13.11□□□□□ -0.31
LSM5-201ENST00000223084 SDC4P31431 198 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 CD70P32970 193 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 NRLP54845 237 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 RPL7AP62424 266 aaKnown RBP13.11□□□□□ -0.31
LSM5-201ENST00000223084 LMAN2Q12907 356 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 FSCBQ5H9T9 825 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 EOGTQ5NDL2 527 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 BRMS1LQ5PSV4 323 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 CHST9Q7L1S5 443 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 MFN1Q8IWA4 741 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 CHPFQ8IZ52 775 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 TSTD1Q8NFU3 115 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 CYB5D2Q8WUJ1 264 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 LMLNQ96KR4 655 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 MCEEQ96PE7 176 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 FAM126AQ9BYI3 521 aaPredicted RBP13.11□□□□□ -0.31
LSM5-201ENST00000223084 IRX2Q9BZI1 471 aaPredicted RBP13.11□□□□□ -0.31
LSM5-201ENST00000223084 TRIM5Q9C035 493 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 CIPCQ9C0C6 399 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 ELOVL2Q9NXB9 296 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 CACNA2D2Q9NY47 1150 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 ADAMTS1Q9UHI8 967 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 GGA2Q9UJY4 613 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 VANGL2Q9ULK5 521 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 PCDHGA2Q9Y5H1 932 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 RAD54BQ9Y620 910 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 GPR179Q6PRD1 2367 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 EML5Q05BV3 1969 aa13.11□□□□□ -0.31
LSM5-201ENST00000223084 TYW5A2RUC4 315 aaKnown RBP13.1□□□□□ -0.31
LSM5-201ENST00000223084 HRO43593 1189 aa13.1□□□□□ -0.31
LSM5-201ENST00000223084 RTN2O75298 545 aa13.1□□□□□ -0.31
LSM5-201ENST00000223084 ENDOD1O94919 500 aa13.1□□□□□ -0.31
LSM5-201ENST00000223084 LUC7L3O95232 432 aaKnown RBP13.1□□□□□ -0.31
LSM5-201ENST00000223084 APBB3O95704 486 aa13.1□□□□□ -0.31
LSM5-201ENST00000223084 GZMAP12544 262 aa13.1□□□□□ -0.31
LSM5-201ENST00000223084 GPD1P21695 349 aa13.1□□□□□ -0.31
LSM5-201ENST00000223084 NTSR1P30989 418 aa13.1□□□□□ -0.31
LSM5-201ENST00000223084 HOXA6P31267 233 aa13.1□□□□□ -0.31
LSM5-201ENST00000223084 PTPN9P43378 593 aa13.1□□□□□ -0.31
LSM5-201ENST00000223084 NUMBP49757 651 aa13.1□□□□□ -0.31
LSM5-201ENST00000223084 OGDHQ02218 1023 aa13.1□□□□□ -0.31
LSM5-201ENST00000223084 MAMLD1Q13495 774 aa13.1□□□□□ -0.31
LSM5-201ENST00000223084 CDH18Q13634 790 aa13.1□□□□□ -0.31
LSM5-201ENST00000223084 HSF5Q4G112 596 aaPredicted RBP13.1□□□□□ -0.31
LSM5-201ENST00000223084 PPP1R15BQ5SWA1 713 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms