RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 CTNND2Q9UQB3 1225 aa18.32■□□□□ 0.52
SHKBP1-223ENST00000600552 A0A1B0GTW7 788 aa18.31■□□□□ 0.52
SHKBP1-223ENST00000600552 GABBR2O75899 941 aa18.31■□□□□ 0.52
SHKBP1-223ENST00000600552 PAEPP09466 180 aa18.31■□□□□ 0.52
SHKBP1-223ENST00000600552 KRT5P13647 590 aa18.31■□□□□ 0.52
SHKBP1-223ENST00000600552 COPAP53621 1224 aa18.31■□□□□ 0.52
SHKBP1-223ENST00000600552 TBX4P57082 545 aa18.31■□□□□ 0.52
SHKBP1-223ENST00000600552 CETN1Q12798 172 aa18.31■□□□□ 0.52
SHKBP1-223ENST00000600552 GRIK2Q13002 908 aa18.31■□□□□ 0.52
SHKBP1-223ENST00000600552 METTL3Q86U44 580 aaKnown RBP18.31■□□□□ 0.52
SHKBP1-223ENST00000600552 CREBRFQ8IUR6 639 aa18.31■□□□□ 0.52
SHKBP1-223ENST00000600552 ARHGEF19Q8IW93 802 aa18.31■□□□□ 0.52
SHKBP1-223ENST00000600552 FAM217AQ8IXS0 508 aa18.31■□□□□ 0.52
SHKBP1-223ENST00000600552 OR2T3Q8NH03 318 aa18.31■□□□□ 0.52
SHKBP1-223ENST00000600552 SETD7Q8WTS6 366 aaKnown RBP18.31■□□□□ 0.52
SHKBP1-223ENST00000600552 CEP63Q96MT8 703 aa18.31■□□□□ 0.52
SHKBP1-223ENST00000600552 ZSWIM1Q9BR11 485 aa18.31■□□□□ 0.52
SHKBP1-223ENST00000600552 LHX5Q9H2C1 402 aa18.31■□□□□ 0.52
SHKBP1-223ENST00000600552 ST7Q9NRC1 585 aa18.31■□□□□ 0.52
SHKBP1-223ENST00000600552 WASF3Q9UPY6 502 aa18.31■□□□□ 0.52
SHKBP1-223ENST00000600552 FRYQ5TBA9 3013 aa18.31■□□□□ 0.52
SHKBP1-223ENST00000600552 NUMA1Q14980 2115 aa18.31■□□□□ 0.52
SHKBP1-223ENST00000600552 LTFP02788 710 aa18.3■□□□□ 0.52
SHKBP1-223ENST00000600552 PABPC1P11940 636 aaKnown RBP18.3■□□□□ 0.52
SHKBP1-223ENST00000600552 SLC11A2P49281 568 aa18.3■□□□□ 0.52
SHKBP1-223ENST00000600552 ZNF132P52740 706 aa18.3■□□□□ 0.52
SHKBP1-223ENST00000600552 NUCB2P80303 420 aa18.3■□□□□ 0.52
SHKBP1-223ENST00000600552 ENPP2Q13822 863 aa18.3■□□□□ 0.52
SHKBP1-223ENST00000600552 TRIP6Q15654 476 aaKnown RBP18.3■□□□□ 0.52
SHKBP1-223ENST00000600552 CNGA2Q16280 664 aa18.3■□□□□ 0.52
SHKBP1-223ENST00000600552 MBLAC2Q68D91 279 aa18.3■□□□□ 0.52
SHKBP1-223ENST00000600552 ADAM32Q8TC27 787 aa18.3■□□□□ 0.52
SHKBP1-223ENST00000600552 GANCQ8TET4 914 aa18.3■□□□□ 0.52
SHKBP1-223ENST00000600552 WFIKKN2Q8TEU8 576 aa18.3■□□□□ 0.52
SHKBP1-223ENST00000600552 SLC35F5Q8WV83 523 aa18.3■□□□□ 0.52
SHKBP1-223ENST00000600552 TIGD1Q96MW7 591 aa18.3■□□□□ 0.52
SHKBP1-223ENST00000600552 GTPBP4Q9BZE4 634 aaKnown RBP18.3■□□□□ 0.52
SHKBP1-223ENST00000600552 MTG2Q9H4K7 406 aa18.3■□□□□ 0.52
SHKBP1-223ENST00000600552 IL21RQ9HBE5 538 aa18.3■□□□□ 0.52
SHKBP1-223ENST00000600552 DNAAF2Q9NVR5 837 aaKnown RBP18.3■□□□□ 0.52
SHKBP1-223ENST00000600552 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.3■□□□□ 0.52
SHKBP1-223ENST00000600552 CKAP5Q14008 2032 aa18.29■□□□□ 0.52
SHKBP1-223ENST00000600552 METTL12A8MUP2 240 aa18.29■□□□□ 0.52
SHKBP1-223ENST00000600552 UPK3BL1B0FP48 263 aa18.29■□□□□ 0.52
SHKBP1-223ENST00000600552 UPK3BL2E5RIL1 263 aa18.29■□□□□ 0.52
SHKBP1-223ENST00000600552 BCAT2O15382 392 aaPredicted RBP18.29■□□□□ 0.52
SHKBP1-223ENST00000600552 MOCS2O96007 188 aaPredicted RBP18.29■□□□□ 0.52
SHKBP1-223ENST00000600552 POLR2EP19388 210 aaKnown RBP18.29■□□□□ 0.52
SHKBP1-223ENST00000600552 SLC6A4P31645 630 aa18.29■□□□□ 0.52
SHKBP1-223ENST00000600552 CD70P32970 193 aa18.29■□□□□ 0.52
SHKBP1-223ENST00000600552 PKDCCQ504Y2 493 aa18.29■□□□□ 0.52
SHKBP1-223ENST00000600552 ADIPOR2Q86V24 386 aa18.29■□□□□ 0.52
SHKBP1-223ENST00000600552 UNC45BQ8IWX7 931 aa18.29■□□□□ 0.52
SHKBP1-223ENST00000600552 SCUBE3Q8IX30 993 aa18.29■□□□□ 0.52
SHKBP1-223ENST00000600552 CARNMT1Q8N4J0 409 aa18.29■□□□□ 0.52
SHKBP1-223ENST00000600552 PNPLA1Q8N8W4 532 aa18.29■□□□□ 0.52
SHKBP1-223ENST00000600552 CADM4Q8NFZ8 388 aa18.29■□□□□ 0.52
SHKBP1-223ENST00000600552 SPATA20Q8TB22 786 aa18.29■□□□□ 0.52
SHKBP1-223ENST00000600552 WFDC5Q8TCV5 224 aa18.29■□□□□ 0.52
SHKBP1-223ENST00000600552 FAM149B1Q96BN6 582 aa18.29■□□□□ 0.52
SHKBP1-223ENST00000600552 C6orf106Q9H6K1 298 aaPredicted RBP18.29■□□□□ 0.52
SHKBP1-223ENST00000600552 GAREM1Q9H706 876 aa18.29■□□□□ 0.52
SHKBP1-223ENST00000600552 A0A1B0GVT2 93 aa18.28■□□□□ 0.52
SHKBP1-223ENST00000600552 ACSL4O60488 711 aa18.28■□□□□ 0.52
SHKBP1-223ENST00000600552 ATP5BP06576 529 aaKnown RBP18.28■□□□□ 0.52
SHKBP1-223ENST00000600552 ACSL1P33121 698 aa18.28■□□□□ 0.52
SHKBP1-223ENST00000600552 CSNK1EP49674 416 aaKnown RBP18.28■□□□□ 0.52
SHKBP1-223ENST00000600552 NUMBP49757 651 aa18.28■□□□□ 0.52
SHKBP1-223ENST00000600552 ZNF445P59923 1031 aa18.28■□□□□ 0.52
SHKBP1-223ENST00000600552 PIK3R6Q5UE93 754 aa18.28■□□□□ 0.52
SHKBP1-223ENST00000600552 NAXDQ8IW45 347 aa18.28■□□□□ 0.52
SHKBP1-223ENST00000600552 MFN1Q8IWA4 741 aa18.28■□□□□ 0.52
SHKBP1-223ENST00000600552 AHI1Q8N157 1196 aa18.28■□□□□ 0.52
SHKBP1-223ENST00000600552 CFAP52Q8N1V2 620 aa18.28■□□□□ 0.52
SHKBP1-223ENST00000600552 EHBP1Q8NDI1 1231 aa18.28■□□□□ 0.52
SHKBP1-223ENST00000600552 ZCCHC14Q8WYQ9 949 aaKnown RBP18.28■□□□□ 0.52
SHKBP1-223ENST00000600552 DNASE2BQ8WZ79 361 aa18.28■□□□□ 0.52
SHKBP1-223ENST00000600552 IRGQQ8WZA9 623 aa18.28■□□□□ 0.52
SHKBP1-223ENST00000600552 PRSS16Q9NQE7 514 aa18.28■□□□□ 0.52
SHKBP1-223ENST00000600552 IGF2RP11717 2491 aa18.27■□□□□ 0.52
SHKBP1-223ENST00000600552 FAM47DPA6NHR8 397 aa18.27■□□□□ 0.52
SHKBP1-223ENST00000600552 GOLGA8CPA6NN73 597 aa18.27■□□□□ 0.52
SHKBP1-223ENST00000600552 PPP1R3GB7ZBB8 358 aa18.27■□□□□ 0.52
SHKBP1-223ENST00000600552 FSBPO95073 299 aa18.27■□□□□ 0.52
SHKBP1-223ENST00000600552 DNTTP04053 509 aa18.27■□□□□ 0.52
SHKBP1-223ENST00000600552 KCNH2Q12809 1159 aa18.27■□□□□ 0.52
SHKBP1-223ENST00000600552 CAMK2GQ13555 558 aaPredicted RBP18.27■□□□□ 0.52
SHKBP1-223ENST00000600552 STILQ15468 1287 aa18.27■□□□□ 0.52
SHKBP1-223ENST00000600552 NUGGCQ68CJ6 796 aa18.27■□□□□ 0.52
SHKBP1-223ENST00000600552 TTI2Q6NXR4 508 aa18.27■□□□□ 0.52
SHKBP1-223ENST00000600552 MSANTD2Q6P1R3 559 aa18.27■□□□□ 0.52
SHKBP1-223ENST00000600552 DENND1BQ6P3S1 775 aa18.27■□□□□ 0.52
SHKBP1-223ENST00000600552 CCDC117Q8IWD4 279 aaPredicted RBP18.27■□□□□ 0.52
SHKBP1-223ENST00000600552 GATA6Q92908 595 aa18.27■□□□□ 0.52
SHKBP1-223ENST00000600552 SRRTQ9BXP5 876 aaKnown RBP18.27■□□□□ 0.52
SHKBP1-223ENST00000600552 INTS2Q9H0H0 1204 aaKnown RBP18.27■□□□□ 0.52
SHKBP1-223ENST00000600552 TMEM245Q9H330 911 aa18.27■□□□□ 0.52
SHKBP1-223ENST00000600552 STOML2Q9UJZ1 356 aa18.27■□□□□ 0.52
SHKBP1-223ENST00000600552 NAALADL1Q9UQQ1 740 aa18.27■□□□□ 0.52
SHKBP1-223ENST00000600552 NEUROG3Q9Y4Z2 214 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms