RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 GOLGA8DPQ0D2H9 430 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 MESP2Q0VG99 397 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 PDGFRLQ15198 375 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 CCDC186Q7Z3E2 898 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 BBS7Q8IWZ6 715 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 CCDC33Q8N5R6 958 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 NEK11Q8NG66 645 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 OR2I1PQ8NGU4 316 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 SLC39A7Q92504 469 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 CAMK1GQ96NX5 476 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 CPXM1Q96SM3 734 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 KLF16Q9BXK1 252 aaPredicted RBP14.51□□□□□ -0.09
CLN3-235ENST00000568497 STK33Q9BYT3 514 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 KIF9Q9HAQ2 790 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 IFNKQ9P0W0 207 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 BCCIPQ9P287 314 aaKnown RBP eCLIP14.51□□□□□ -0.09
CLN3-235ENST00000568497 KIAA1257Q9ULG3 409 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 SLC6A14Q9UN76 642 aa14.51□□□□□ -0.09
CLN3-235ENST00000568497 SLC12A8A0AV02 714 aa14.5□□□□□ -0.09
CLN3-235ENST00000568497 LRRC10BA6NIK2 292 aa14.5□□□□□ -0.09
CLN3-235ENST00000568497 AP5Z1O43299 807 aa14.5□□□□□ -0.09
CLN3-235ENST00000568497 PLA2G2AP14555 144 aa14.5□□□□□ -0.09
CLN3-235ENST00000568497 ITPKAP23677 461 aa14.5□□□□□ -0.09
CLN3-235ENST00000568497 SLC6A11P48066 632 aa14.5□□□□□ -0.09
CLN3-235ENST00000568497 IFNAR2P48551 515 aa14.5□□□□□ -0.09
CLN3-235ENST00000568497 PTK2Q05397 1052 aa14.5□□□□□ -0.09
CLN3-235ENST00000568497 PDCLQ13371 301 aa14.5□□□□□ -0.09
CLN3-235ENST00000568497 EML3Q32P44 896 aa14.5□□□□□ -0.09
CLN3-235ENST00000568497 PTPN20Q4JDL3 420 aa14.5□□□□□ -0.09
CLN3-235ENST00000568497 BSPRYQ5W0U4 402 aa14.5□□□□□ -0.09
CLN3-235ENST00000568497 ZNF605Q86T29 641 aa14.5□□□□□ -0.09
CLN3-235ENST00000568497 C12orf40Q86WS4 652 aa14.5□□□□□ -0.09
CLN3-235ENST00000568497 PDZD8Q8NEN9 1154 aa14.5□□□□□ -0.09
CLN3-235ENST00000568497 CPA5Q8WXQ8 436 aa14.5□□□□□ -0.09
CLN3-235ENST00000568497 PCDHB18PQ96TA0 734 aa14.5□□□□□ -0.09
CLN3-235ENST00000568497 DNAI2Q9GZS0 605 aa14.5□□□□□ -0.09
CLN3-235ENST00000568497 ECT2Q9H8V3 914 aa14.5□□□□□ -0.09
CLN3-235ENST00000568497 ZDHHC4Q9NPG8 344 aa14.5□□□□□ -0.09
CLN3-235ENST00000568497 NAALADL1Q9UQQ1 740 aa14.5□□□□□ -0.09
CLN3-235ENST00000568497 SHROOM3Q8TF72 1996 aa14.5□□□□□ -0.09
CLN3-235ENST00000568497 PLXNB3Q9ULL4 1909 aa14.5□□□□□ -0.09
CLN3-235ENST00000568497 A0A1B0GTH6 734 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 GOLGA6L19H0YKK7 550 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 TRIM24O15164 1050 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 SH3BP5O60239 455 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 GREM1O60565 184 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 C1QL1O75973 258 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 KLKB1P03952 638 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 FYNP06241 537 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 SOX5P35711 763 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 SLC8A3P57103 927 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 NR1I3Q14994 352 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 DUOXA1Q1HG43 343 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 GAB4Q2WGN9 574 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 SNX30Q5VWJ9 437 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 PEAR1Q5VY43 1037 aaPredicted RBP14.49□□□□□ -0.09
CLN3-235ENST00000568497 NAA35Q5VZE5 725 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 BTBD8Q5XKL5 378 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 PM20D1Q6GTS8 502 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 FAM183BPQ6ZVS7 135 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 RSRC2Q7L4I2 434 aaKnown RBP14.49□□□□□ -0.09
CLN3-235ENST00000568497 PGBD3Q8N328 593 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 FRMD1Q8N878 549 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 NAT16Q8N8M0 369 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 SLC30A5Q8TAD4 765 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 OLIG1Q8TAK6 271 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 EPS8L1Q8TE68 723 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 USP33Q8TEY7 942 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 OSCP1Q8WVF1 389 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 CPLX3Q8WVH0 158 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 KCTD13Q8WZ19 329 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 ERLEC1Q96DZ1 483 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 CEP295NLQ96MC4 621 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 SPAG5Q96R06 1193 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 ERGIC2Q96RQ1 377 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 SLC4A5Q9BY07 1137 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 PDCL3Q9H2J4 239 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 PNPLA8Q9NP80 782 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 COMMD8Q9NX08 183 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 EHD2Q9NZN4 543 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 NOCTQ9UK39 431 aaKnown RBP14.49□□□□□ -0.09
CLN3-235ENST00000568497 PILRBQ9UKJ0 227 aa14.49□□□□□ -0.09
CLN3-235ENST00000568497 APOBEC2Q9Y235 224 aaKnown RBP14.49□□□□□ -0.09
CLN3-235ENST00000568497 SYNJ2BP-COX16A0A087WUM0 186 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 CYP17A1P05093 508 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 SKILP12757 684 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 CD59P13987 128 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 HOXD12P35452 270 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 KRT9P35527 623 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 ATP5C1P36542 298 aaKnown RBP14.48□□□□□ -0.09
CLN3-235ENST00000568497 P2RY2P41231 377 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 NUMBP49757 651 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 UBASH3AP57075 661 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 FMO1Q01740 532 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 ZNF268Q14587 947 aaPredicted RBP14.48□□□□□ -0.09
CLN3-235ENST00000568497 CRY1Q16526 586 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 SPDYCQ5MJ68 293 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 SYPL2Q5VXT5 272 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 OR6B2Q6IFH4 312 aa14.48□□□□□ -0.09
CLN3-235ENST00000568497 TPGS1Q6ZTW0 290 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms