RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 TAS2R14Q9NYV8 317 aa11.62□□□□□ -0.55
SHMT2-216ENST00000554975 CNTN3Q9P232 1028 aa11.62□□□□□ -0.55
SHMT2-216ENST00000554975 CNOT8Q9UFF9 292 aaKnown RBP11.62□□□□□ -0.55
SHMT2-216ENST00000554975 PCYOX1Q9UHG3 505 aa11.62□□□□□ -0.55
SHMT2-216ENST00000554975 MSRB2Q9Y3D2 182 aa11.62□□□□□ -0.55
SHMT2-216ENST00000554975 GPSM3Q9Y4H4 160 aa11.62□□□□□ -0.55
SHMT2-216ENST00000554975 NEUROG3Q9Y4Z2 214 aa11.62□□□□□ -0.55
SHMT2-216ENST00000554975 CEP83Q9Y592 693 aa11.62□□□□□ -0.55
SHMT2-216ENST00000554975 MYO18AQ92614 2054 aaKnown RBP11.62□□□□□ -0.55
SHMT2-216ENST00000554975 PLXND1Q9Y4D7 1925 aa11.62□□□□□ -0.55
SHMT2-216ENST00000554975 ANAPC1Q9H1A4 1944 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 A0A0B4J269 797 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 SPAARA0A1B0GVQ0 90 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 ESYT3A0FGR9 886 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 LACTBL1A8MY62 500 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 SOAT2O75908 522 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 LSM8O95777 96 aaKnown RBP11.61□□□□□ -0.55
SHMT2-216ENST00000554975 MMEP08473 750 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 CPB1P15086 417 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 CHRNB2P17787 502 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 NOP14P78316 857 aaKnown RBP11.61□□□□□ -0.55
SHMT2-216ENST00000554975 IRX4P78413 519 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 CYP4F8P98187 520 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 POU5F1Q01860 360 aaKnown RBP11.61□□□□□ -0.55
SHMT2-216ENST00000554975 CUL2Q13617 745 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 MESDQ14696 234 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 ITPRIPL2Q3MIP1 535 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 GPR158Q5T848 1215 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 TRIM68Q6AZZ1 485 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 ZNF280DQ6N043 979 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 SLC47A2Q86VL8 602 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 SPATS2Q86XZ4 545 aaKnown RBP11.61□□□□□ -0.55
SHMT2-216ENST00000554975 JAMLQ86YT9 394 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 IQCKQ8N0W5 287 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 TSEN2Q8NCE0 465 aaKnown RBP11.61□□□□□ -0.55
SHMT2-216ENST00000554975 BEST2Q8NFU1 509 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 RIN3Q8TB24 985 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 EZH1Q92800 747 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-216ENST00000554975 SLCO2A1Q92959 643 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 CD101Q93033 1021 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 SUSD3Q96L08 255 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 ATP6V1G3Q96LB4 118 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 GDAP1L1Q96MZ0 367 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 ERP44Q9BS26 406 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 AP1M1Q9BXS5 423 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 CAPS2Q9BXY5 557 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 FAM124BQ9H5Z6 455 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-216ENST00000554975 AMACRQ9UHK6 382 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 FEZ2Q9UHY8 353 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-216ENST00000554975 PCDHA3Q9Y5H8 950 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 MYOFQ9NZM1 2061 aa11.61□□□□□ -0.55
SHMT2-216ENST00000554975 NAV2Q8IVL1 2488 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 DPYSL4O14531 572 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 TTI1O43156 1089 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 THAP12O43422 761 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 XPOTO43592 962 aaKnown RBP11.6□□□□□ -0.55
SHMT2-216ENST00000554975 RHOBTB1O94844 696 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 GAS8O95995 478 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 CALB1P05937 261 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 NR1D1P20393 614 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 BCKDHBP21953 392 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 COMTP21964 271 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 RPL9P32969 192 aaKnown RBP11.6□□□□□ -0.55
SHMT2-216ENST00000554975 ACOT2P49753 483 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 GUCY2FP51841 1108 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 RNASE9P60153 205 aaKnown RBP11.6□□□□□ -0.55
SHMT2-216ENST00000554975 C1QBPQ07021 282 aaKnown RBP11.6□□□□□ -0.55
SHMT2-216ENST00000554975 DUSP4Q13115 394 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 SLMAPQ14BN4 828 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 EMC10Q5UCC4 262 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 DCAF12L1Q5VU92 463 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 PMS2CLQ68D20 193 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 TMC3Q7Z5M5 1100 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 PDZD3Q86UT5 571 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 PROSER1Q86XN7 944 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 SLC13A5Q86YT5 568 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-216ENST00000554975 CAMKK1Q8N5S9 505 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 BPIFB1Q8TDL5 484 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 KAT5Q92993 513 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 TPSD1Q9BZJ3 242 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 ATXN3LQ9H3M9 355 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 PLEKHA5Q9HAU0 1116 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 GKN1Q9NS71 199 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 TUBGCP4Q9UGJ1 667 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 ANAPC7Q9UJX3 599 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 UBQLN1Q9UMX0 589 aaKnown RBP11.6□□□□□ -0.55
SHMT2-216ENST00000554975 CNTN6Q9UQ52 1028 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 PLAAQ9Y263 795 aa11.6□□□□□ -0.55
SHMT2-216ENST00000554975 TIMM13Q9Y5L4 95 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-216ENST00000554975 HELZP42694 1942 aaKnown RBP11.6□□□□□ -0.55
SHMT2-216ENST00000554975 ATXN2Q99700 1313 aaKnown RBP11.6□□□□□ -0.55
SHMT2-216ENST00000554975 PCDH15Q96QU1 1955 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 ANTXRLA6NF34 631 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 ZSCAN5CA6NGD5 496 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-216ENST00000554975 TMEM110-MUSTN1A8MSY1 372 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 TRDMT1O14717 391 aaKnown RBP11.59□□□□□ -0.55
SHMT2-216ENST00000554975 KHNYNO15037 678 aaKnown RBP11.59□□□□□ -0.55
SHMT2-216ENST00000554975 EIF3HO15372 352 aaKnown RBP eCLIP11.59□□□□□ -0.55
SHMT2-216ENST00000554975 PPFIA2O75334 1257 aa11.59□□□□□ -0.55
SHMT2-216ENST00000554975 IL18RAPO95256 599 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms