RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 RBBP8NLQ8NC74 664 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-214ENST00000554604 KAT5Q92993 513 aa12.97□□□□□ -0.33
SHMT2-214ENST00000554604 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.97□□□□□ -0.33
SHMT2-214ENST00000554604 BBS2Q9BXC9 721 aa12.97□□□□□ -0.33
SHMT2-214ENST00000554604 ULBP1Q9BZM6 244 aa12.97□□□□□ -0.33
SHMT2-214ENST00000554604 MARCH2Q9P0N8 246 aa12.97□□□□□ -0.33
SHMT2-214ENST00000554604 WDR35Q9P2L0 1181 aa12.97□□□□□ -0.33
SHMT2-214ENST00000554604 ADAMTS1Q9UHI8 967 aa12.97□□□□□ -0.33
SHMT2-214ENST00000554604 CAPN6Q9Y6Q1 641 aa12.97□□□□□ -0.33
SHMT2-214ENST00000554604 CTAGE15A4D2H0 777 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 NEDD8-MDP1E9PL57 170 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 M0QYV0 167 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 AXIN1O15169 862 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 TULP3O75386 442 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 STC2O76061 302 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 MOCS3O95396 460 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 CALCAP01258 141 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 HMBSP08397 361 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 CTAGE8P0CG41 777 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 KRT5P13647 590 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 BRD2P25440 801 aaKnown RBP12.96□□□□□ -0.33
SHMT2-214ENST00000554604 TIE1P35590 1138 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 TNFRSF4P43489 277 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 MESP2Q0VG99 397 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 CNGA2Q16280 664 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 TEX35Q5T0J7 233 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 PM20D1Q6GTS8 502 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 FBXO38Q6PIJ6 1188 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 CTAGE6Q86UF2 777 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 CTAGE4Q8IX94 777 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 TSTD1Q8NFU3 115 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 SLC30A5Q8TAD4 765 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 RNF139Q8WU17 664 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 GAB3Q8WWW8 586 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 TFAP2BQ92481 460 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 XPO6Q96QU8 1125 aaKnown RBP12.96□□□□□ -0.33
SHMT2-214ENST00000554604 SYT11Q9BT88 431 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 DCLK3Q9C098 648 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 UBE2TQ9NPD8 197 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-214ENST00000554604 OLA1Q9NTK5 396 aaKnown RBP12.96□□□□□ -0.33
SHMT2-214ENST00000554604 DNAJC17Q9NVM6 304 aaKnown RBP12.96□□□□□ -0.33
SHMT2-214ENST00000554604 ARGLU1Q9NWB6 273 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-214ENST00000554604 MMP17Q9ULZ9 603 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 USP18Q9UMW8 372 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 SNX12Q9UMY4 172 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 ZNF510Q9Y2H8 683 aa12.96□□□□□ -0.33
SHMT2-214ENST00000554604 NUP205Q92621 2012 aa12.96□□□□□ -0.34
SHMT2-214ENST00000554604 SLC12A8A0AV02 714 aa12.95□□□□□ -0.34
SHMT2-214ENST00000554604 ENC1O14682 589 aa12.95□□□□□ -0.34
SHMT2-214ENST00000554604 GREM1O60565 184 aa12.95□□□□□ -0.34
SHMT2-214ENST00000554604 KLF8O95600 359 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-214ENST00000554604 RETP07949 1114 aa12.95□□□□□ -0.34
SHMT2-214ENST00000554604 LCP1P13796 627 aa12.95□□□□□ -0.34
SHMT2-214ENST00000554604 TYRP14679 529 aa12.95□□□□□ -0.34
SHMT2-214ENST00000554604 TCP1P17987 556 aaKnown RBP12.95□□□□□ -0.34
SHMT2-214ENST00000554604 ID4P47928 161 aa12.95□□□□□ -0.34
SHMT2-214ENST00000554604 RGS7P49802 495 aa12.95□□□□□ -0.34
SHMT2-214ENST00000554604 DGKEP52429 567 aa12.95□□□□□ -0.34
SHMT2-214ENST00000554604 IFI16Q16666 785 aaKnown RBP12.95□□□□□ -0.34
SHMT2-214ENST00000554604 HSF5Q4G112 596 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-214ENST00000554604 GRAMD4Q6IC98 578 aa12.95□□□□□ -0.34
SHMT2-214ENST00000554604 ALKBH5Q6P6C2 394 aaKnown RBP12.95□□□□□ -0.34
SHMT2-214ENST00000554604 SFTPA1Q8IWL2 248 aa12.95□□□□□ -0.34
SHMT2-214ENST00000554604 ETFBKMTQ8IXQ9 262 aa12.95□□□□□ -0.34
SHMT2-214ENST00000554604 ALLCQ8N6M5 410 aa12.95□□□□□ -0.34
SHMT2-214ENST00000554604 KCTD13Q8WZ19 329 aa12.95□□□□□ -0.34
SHMT2-214ENST00000554604 NDRG1Q92597 394 aaKnown RBP12.95□□□□□ -0.34
SHMT2-214ENST00000554604 BHMTQ93088 406 aa12.95□□□□□ -0.34
SHMT2-214ENST00000554604 KREMEN1Q96MU8 473 aa12.95□□□□□ -0.34
SHMT2-214ENST00000554604 CNGB3Q9NQW8 809 aa12.95□□□□□ -0.34
SHMT2-214ENST00000554604 SALL4Q9UJQ4 1053 aa12.95□□□□□ -0.34
SHMT2-214ENST00000554604 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.95□□□□□ -0.34
SHMT2-214ENST00000554604 SPTBN2O15020 2390 aa12.95□□□□□ -0.34
SHMT2-214ENST00000554604 CEP192Q8TEP8 1941 aa12.94□□□□□ -0.34
SHMT2-214ENST00000554604 A0A0A0MRY4 1105 aa12.94□□□□□ -0.34
SHMT2-214ENST00000554604 A0A0A6YYK5 440 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-214ENST00000554604 YJEFN3A6XGL0 299 aa12.94□□□□□ -0.34
SHMT2-214ENST00000554604 E7ENQ6 273 aa12.94□□□□□ -0.34
SHMT2-214ENST00000554604 DDX3XO00571 662 aaKnown RBP eCLIP12.94□□□□□ -0.341e-14■■□□□ 13.5
SHMT2-214ENST00000554604 CACNG3O60359 315 aa12.94□□□□□ -0.34
SHMT2-214ENST00000554604 ALDH1A2O94788 518 aa12.94□□□□□ -0.34
SHMT2-214ENST00000554604 TUBBP07437 444 aa12.94□□□□□ -0.34
SHMT2-214ENST00000554604 H2AFZP0C0S5 128 aa12.94□□□□□ -0.34
SHMT2-214ENST00000554604 CORO1AP31146 461 aaKnown RBP12.94□□□□□ -0.34
SHMT2-214ENST00000554604 CHKAP35790 457 aa12.94□□□□□ -0.34
SHMT2-214ENST00000554604 MFAP3P55082 362 aa12.94□□□□□ -0.34
SHMT2-214ENST00000554604 SPEM2Q0P670 501 aa12.94□□□□□ -0.34
SHMT2-214ENST00000554604 CRY1Q16526 586 aa12.94□□□□□ -0.34
SHMT2-214ENST00000554604 PKDCCQ504Y2 493 aa12.94□□□□□ -0.34
SHMT2-214ENST00000554604 EOGTQ5NDL2 527 aa12.94□□□□□ -0.34
SHMT2-214ENST00000554604 EMC10Q5UCC4 262 aa12.94□□□□□ -0.34
SHMT2-214ENST00000554604 BSPRYQ5W0U4 402 aa12.94□□□□□ -0.34
SHMT2-214ENST00000554604 ANO7Q6IWH7 933 aa12.94□□□□□ -0.34
SHMT2-214ENST00000554604 Q6ZNB5 142 aa12.94□□□□□ -0.34
SHMT2-214ENST00000554604 H2AFVQ71UI9 128 aa12.94□□□□□ -0.34
SHMT2-214ENST00000554604 ENOSF1Q7L5Y1 443 aa12.94□□□□□ -0.34
SHMT2-214ENST00000554604 ZNF572Q7Z3I7 529 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-214ENST00000554604 TRMT11Q7Z4G4 463 aaKnown RBP12.94□□□□□ -0.34
SHMT2-214ENST00000554604 DENND1CQ8IV53 801 aa12.94□□□□□ -0.34
SHMT2-214ENST00000554604 FAM160A2Q8N612 972 aaPredicted RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms