RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 PGAP3Q96FM1 320 aaPredicted RBP13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 CELF6Q96J87 481 aaKnown RBP13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 GMIPQ9P107 970 aa13.16□□□□□ -0.3
VIPAS39-206ENST00000553888 KCNK1O00180 336 aa13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 SYN3O14994 580 aa13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 COL6A1P12109 1028 aa13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 ZFXP17010 805 aaPredicted RBP13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 SEC24CP53992 1094 aa13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 ARL4CP56559 192 aa13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 HEATR6Q6AI08 1181 aaKnown RBP13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 EXOC3L1Q86VI1 746 aa13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 TFB1MQ8WVM0 346 aaKnown RBP13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 HTR3CQ8WXA8 447 aa13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 APBB2Q92870 758 aa13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 NTAN1Q96AB6 310 aa13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 TMEM109Q9BVC6 243 aa13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 VN1R3Q9BXE9 311 aa13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 PNPLA8Q9NP80 782 aa13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 PAK5Q9P286 719 aa13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 PCDHB5Q9Y5E4 795 aa13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 IGLV3-25P01717 112 aa13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 MDH1P40925 334 aaKnown RBP13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 ELK3P41970 407 aa13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 SCAPQ12770 1279 aa13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 OLIG2Q13516 323 aa13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 MGAT5BQ3V5L5 792 aa13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 ZNF280DQ6N043 979 aa13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 GIPC2Q8TF65 315 aa13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 PYROXD1Q8WU10 500 aa13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 P2RY11Q96G91 374 aa13.15□□□□□ -0.3
VIPAS39-206ENST00000553888 SF3B1O75533 1304 aaKnown RBP eCLIP13.15□□□□□ -0.31
VIPAS39-206ENST00000553888 EXOC1LA0A1B0GW35 172 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 MTMR11A4FU01 709 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 IRAK2O43187 625 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 PAX3P23760 479 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 EPHB2P29323 1055 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 NR2C2P49116 596 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 DUSP4Q13115 394 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 TMED2Q15363 201 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 TNFAIP8L3Q5GJ75 292 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 PSTKQ8IV42 348 aaKnown RBP13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 SERPINB12Q96P63 405 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 SLC9A7Q96T83 725 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 CRISPLD2Q9H0B8 497 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 MLXIPLQ9NP71 852 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 TMEM39AQ9NV64 488 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 GEMIN8Q9NWZ8 242 aaKnown RBP13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 WBP1LQ9NX94 342 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 RCOR3Q9P2K3 495 aaPredicted RBP13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 CDY1Q9Y6F8 540 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 NYNRINQ9P2P1 1898 aaKnown RBP13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 RNF103O00237 685 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 EIF3HO15372 352 aaKnown RBP eCLIP13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 CAPN15O75808 1086 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 LSP1P33241 339 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 NUMBP49757 651 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 LRRC26Q2I0M4 334 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 RWDD4Q6NW29 188 aaKnown RBP13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 CAND1Q86VP6 1230 aaKnown RBP13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 NUP93Q8N1F7 819 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 FOXP3Q9BZS1 431 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 PPANQ9NQ55 473 aaKnown RBP13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 ABCC13Q9NSE7 274 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 TBX21Q9UL17 535 aa13.14□□□□□ -0.31
VIPAS39-206ENST00000553888 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 CFAP69A5D8W1 941 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 DEFB103AP81534 67 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 XRCC4Q13426 336 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 EIF4EBP2Q13542 120 aaPredicted RBP13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 PAFAH1B3Q15102 231 aaKnown RBP13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 ARL13BQ3SXY8 428 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 ANKRD20A2Q5SQ80 823 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 ANKRD20A1Q5TYW2 823 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 ANKRD20A3Q5VUR7 823 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 ZNF534Q76KX8 674 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 PDIK1LQ8N165 341 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 MPP5Q8N3R9 675 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 ARHGEF2Q92974 986 aaKnown RBP13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 PAWRQ96IZ0 340 aaKnown RBP13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 KIF9Q9HAQ2 790 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 NDFIP2Q9NV92 336 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 NEU3Q9UQ49 428 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 BPTFQ12830 3046 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 A0A087WUV0 522 aaPredicted RBP13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 E7ESA3 106 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 PAGE1O75459 146 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 GCATO75600 419 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 F9P00740 461 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 AGTP01019 485 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 CHN1P15882 459 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 WASHC5Q12768 1159 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 PRKD1Q15139 912 aaPredicted RBP13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 NFE2Q16621 373 aaPredicted RBP13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 EMC10Q5UCC4 262 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 MFSD5Q6N075 450 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 ARHGAP36Q6ZRI8 547 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 ARHGEF18Q6ZSZ5 1173 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 C3orf62Q6ZUJ4 267 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 MGARPQ8TDB4 240 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms