RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 JPH1Q9HDC5 661 aaPredicted RBP5□□□□□ -1.61
LIMA1-214ENST00000552783 CYP26B1Q9NR63 512 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 CISHQ9NSE2 258 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 TMEM216Q9P0N5 145 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 FBXO40Q9UH90 709 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 APOBEC2Q9Y235 224 aaKnown RBP5□□□□□ -1.61
LIMA1-214ENST00000552783 UBIAD1Q9Y5Z9 338 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 GMEB1Q9Y692 573 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 WDR81Q562E7 1941 aa5□□□□□ -1.61
LIMA1-214ENST00000552783 APOC4-APOC2K7ER74 178 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 ZC3H11AO75152 810 aaKnown RBP eCLIP4.99□□□□□ -1.61
LIMA1-214ENST00000552783 APOEP02649 317 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 APOC2P02655 101 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 JUNP05412 331 aaKnown RBP4.99□□□□□ -1.61
LIMA1-214ENST00000552783 CCDC166P0CW27 439 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 COX4I1P13073 169 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 IL4RP24394 825 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 HSD17B4P51659 736 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 JAK3P52333 1124 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 NDST2P52849 883 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 PPIDQ08752 370 aaKnown RBP4.99□□□□□ -1.61
LIMA1-214ENST00000552783 ITGA7Q13683 1181 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 ITGA9Q13797 1035 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 PIGHQ14442 188 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-214ENST00000552783 CA9Q16790 459 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 Q3C1V9 767 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 TMEM259Q4ZIN3 620 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 BSPRYQ5W0U4 402 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 CMC1Q7Z7K0 106 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 WDR75Q8IWA0 830 aaKnown RBP4.99□□□□□ -1.61
LIMA1-214ENST00000552783 TRIM42Q8IWZ5 723 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 SAMD3Q8N6K7 520 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.99□□□□□ -1.61
LIMA1-214ENST00000552783 PPP1R14CQ8TAE6 165 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 TRAF3IP1Q8TDR0 691 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-214ENST00000552783 NSUN6Q8TEA1 469 aaKnown RBP4.99□□□□□ -1.61
LIMA1-214ENST00000552783 DIS3LQ8TF46 1054 aaKnown RBP4.99□□□□□ -1.61
LIMA1-214ENST00000552783 ATXN7L3BQ96GX2 97 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 WNK4Q96J92 1243 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 SIGLEC10Q96LC7 697 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 DEFB129Q9H1M3 183 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 COG4Q9H9E3 785 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 STAU2Q9NUL3 570 aaKnown RBP eCLIP4.99□□□□□ -1.61
LIMA1-214ENST00000552783 BTBD7Q9P203 1132 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 RIPK3Q9Y572 518 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 PTPRFP10586 1907 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 H7C0C1 242 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 NEMP1O14524 444 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 CFLARO15519 480 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 DKC1O60832 514 aaKnown RBP eCLIP4.99□□□□□ -1.61
LIMA1-214ENST00000552783 RNASEH2AO75792 299 aaKnown RBP4.99□□□□□ -1.61
LIMA1-214ENST00000552783 LYPLA2O95372 231 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 EGFRP00533 1210 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 HMGCRP04035 888 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 HMGB2P26583 209 aaKnown RBP4.99□□□□□ -1.61
LIMA1-214ENST00000552783 ATP5OP48047 213 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 NUDT2P50583 147 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 ROR1Q01973 937 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 MPP3Q13368 585 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 PGM5Q15124 567 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 DLG2Q15700 870 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 KCTD21Q4G0X4 260 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 ITPRIPL1Q6GPH6 555 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 KLC3Q6P597 504 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 GADL1Q6ZQY3 521 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 DEFB132Q7Z7B7 95 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 ANKRD23Q86SG2 305 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 MICALL2Q8IY33 904 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 LRRC71Q8N4P6 559 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 NIPA2Q8N8Q9 360 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 RNF169Q8NCN4 708 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 MCPH1Q8NEM0 835 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 ACVR1CQ8NER5 493 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 CATSPER2Q96P56 530 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 BTBD9Q96Q07 612 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 TWNKQ96RR1 684 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 CDRT15Q96T59 188 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 ARMC7Q9H6L4 198 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 MYOZ2Q9NPC6 264 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 PDLIM7Q9NR12 457 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 GMPR2Q9P2T1 348 aaKnown RBP4.99□□□□□ -1.61
LIMA1-214ENST00000552783 EBF1Q9UH73 591 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 ITGA11Q9UKX5 1188 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 MFHAS1Q9Y4C4 1052 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 ARID2Q68CP9 1835 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 LOXHD1Q8IVV2 1947 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 TMEM221A6NGB7 291 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 MCF2LO15068 1137 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 WDR46O15213 610 aaKnown RBP4.99□□□□□ -1.61
LIMA1-214ENST00000552783 PLIN3O60664 434 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 STAM2O75886 525 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 CHRNGP07510 517 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 TFE3P19532 575 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-214ENST00000552783 SFNP31947 248 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 GRM5P41594 1212 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 CDH6P55285 790 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 HDAC4P56524 1084 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 ACTR2P61160 394 aa4.99□□□□□ -1.61
LIMA1-214ENST00000552783 PSMC1P62191 440 aaKnown RBP4.99□□□□□ -1.61
LIMA1-214ENST00000552783 SNRPFP62306 86 aaKnown RBP4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms