RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 ARID5AQ03989 594 aa14.17□□□□□ -0.14
SS18-204ENST00000539244 ZBTB16Q05516 673 aa14.17□□□□□ -0.14
SS18-204ENST00000539244 ADIPOR2Q86V24 386 aa14.17□□□□□ -0.14
SS18-204ENST00000539244 SETD7Q8WTS6 366 aaKnown RBP14.17□□□□□ -0.14
SS18-204ENST00000539244 TATDN2Q93075 761 aa14.17□□□□□ -0.14
SS18-204ENST00000539244 IRX2Q9BZI1 471 aaPredicted RBP14.17□□□□□ -0.14
SS18-204ENST00000539244 C6orf106Q9H6K1 298 aaPredicted RBP14.17□□□□□ -0.14
SS18-204ENST00000539244 TSPAN16Q9UKR8 245 aa14.17□□□□□ -0.14
SS18-204ENST00000539244 COQ4Q9Y3A0 265 aa14.17□□□□□ -0.14
SS18-204ENST00000539244 TMEM131Q92545 1883 aa14.16□□□□□ -0.14
SS18-204ENST00000539244 A0A1B0GVT2 93 aa14.16□□□□□ -0.14
SS18-204ENST00000539244 TULP2O00295 520 aa14.16□□□□□ -0.14
SS18-204ENST00000539244 CSNK1EP49674 416 aaKnown RBP14.16□□□□□ -0.14
SS18-204ENST00000539244 BST2Q10589 180 aaKnown RBP14.16□□□□□ -0.14
SS18-204ENST00000539244 PTPRNQ16849 979 aa14.16□□□□□ -0.14
SS18-204ENST00000539244 GOLGA7BQ2TAP0 167 aa14.16□□□□□ -0.14
SS18-204ENST00000539244 MPP7Q5T2T1 576 aa14.16□□□□□ -0.14
SS18-204ENST00000539244 ADGRF1Q5T601 910 aa14.16□□□□□ -0.14
SS18-204ENST00000539244 BSPRYQ5W0U4 402 aa14.16□□□□□ -0.14
SS18-204ENST00000539244 KRBA2Q6ZNG9 492 aa14.16□□□□□ -0.14
SS18-204ENST00000539244 CHST9Q7L1S5 443 aa14.16□□□□□ -0.14
SS18-204ENST00000539244 CACUL1Q86Y37 369 aa14.16□□□□□ -0.14
SS18-204ENST00000539244 AHI1Q8N157 1196 aa14.16□□□□□ -0.14
SS18-204ENST00000539244 KCTD13Q8WZ19 329 aa14.16□□□□□ -0.14
SS18-204ENST00000539244 TMA16Q96EY4 203 aaKnown RBP14.16□□□□□ -0.14
SS18-204ENST00000539244 SPATA32Q96LK8 384 aa14.16□□□□□ -0.14
SS18-204ENST00000539244 LRRC4Q9HBW1 653 aa14.16□□□□□ -0.14
SS18-204ENST00000539244 ABCC13Q9NSE7 274 aa14.16□□□□□ -0.14
SS18-204ENST00000539244 GGA2Q9UJY4 613 aa14.16□□□□□ -0.14
SS18-204ENST00000539244 PLA2G4CQ9UP65 541 aa14.16□□□□□ -0.14
SS18-204ENST00000539244 SLCO1B1Q9Y6L6 691 aa14.16□□□□□ -0.14
SS18-204ENST00000539244 ITPR1Q14643 2758 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 YJEFN3A6XGL0 299 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 E7ENQ6 273 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 TSPAN3O60637 253 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 SEMA4FO95754 770 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 DLDP09622 509 aaKnown RBP14.15□□□□□ -0.14
SS18-204ENST00000539244 EPB41P11171 864 aaKnown RBP14.15□□□□□ -0.14
SS18-204ENST00000539244 PABPC1P11940 636 aaKnown RBP14.15□□□□□ -0.14
SS18-204ENST00000539244 RPS14P62263 151 aaKnown RBP14.15□□□□□ -0.14
SS18-204ENST00000539244 KRT85P78386 507 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 ADIGQ0VDE8 80 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 SUZ12Q15022 739 aaKnown RBP14.15□□□□□ -0.14
SS18-204ENST00000539244 TEAD4Q15561 434 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 KIF19Q2TAC6 998 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 PKDCCQ504Y2 493 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 FNDC3BQ53EP0 1204 aaKnown RBP14.15□□□□□ -0.14
SS18-204ENST00000539244 SGO2Q562F6 1265 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 MSANTD2Q6P1R3 559 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 FAM124AQ86V42 546 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 SPRYD3Q8NCJ5 442 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 RHBDD1Q8TEB9 315 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 RNF139Q8WU17 664 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 CYB5D2Q8WUJ1 264 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 NDRG1Q92597 394 aaKnown RBP14.15□□□□□ -0.14
SS18-204ENST00000539244 IGSF8Q969P0 613 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 BIRC7Q96CA5 298 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 IPO9Q96P70 1041 aaKnown RBP14.15□□□□□ -0.14
SS18-204ENST00000539244 BTBD1Q9H0C5 482 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 TM9SF3Q9HD45 589 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 PRSS16Q9NQE7 514 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 CNGB3Q9NQW8 809 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 ABCB8Q9NUT2 735 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 SFMBT1Q9UHJ3 866 aa14.15□□□□□ -0.14
SS18-204ENST00000539244 GOLGA4Q13439 2230 aaKnown RBP14.15□□□□□ -0.14
SS18-204ENST00000539244 SMG1Q96Q15 3661 aaKnown RBP14.14□□□□□ -0.15
SS18-204ENST00000539244 A0A1W2PQ27 194 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 A0A1W2PQ64 194 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 O00370 1275 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 CETN3O15182 167 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 PAPSS1O43252 624 aaPredicted RBP14.14□□□□□ -0.15
SS18-204ENST00000539244 PCDHGA12O60330 932 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 IGLV3-27P01718 113 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 ATP5BP06576 529 aaKnown RBP14.14□□□□□ -0.15
SS18-204ENST00000539244 ATXN1LP0C7T5 689 aaKnown RBP14.14□□□□□ -0.15
SS18-204ENST00000539244 SETSIPP0DME0 302 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 CD27P26842 260 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 DAOAP59103 153 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 CUL2Q13617 745 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 CBWD6Q4V339 395 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 CBWD3Q5JTY5 395 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 CBWD5Q5RIA9 395 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 MBLAC2Q68D91 279 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 ZC3H3Q8IXZ2 948 aaKnown RBP14.14□□□□□ -0.15
SS18-204ENST00000539244 UBR7Q8N806 425 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 ZNF366Q8N895 744 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 ZNF557Q8N988 423 aaPredicted RBP14.14□□□□□ -0.15
SS18-204ENST00000539244 MDM1Q8TC05 714 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 SNX19Q92543 992 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 EDEM1Q92611 657 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 GOLGA1Q92805 767 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 ORAI3Q9BRQ5 295 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 SGK2Q9HBY8 427 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 SCUBE2Q9NQ36 999 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 HESX1Q9UBX0 185 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 KIAA1257Q9ULG3 409 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 ANKRD6Q9Y2G4 727 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 SNX11Q9Y5W9 270 aa14.14□□□□□ -0.15
SS18-204ENST00000539244 URB1O60287 2271 aaKnown RBP14.13□□□□□ -0.15
SS18-204ENST00000539244 KNTC1P50748 2209 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms