RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 HCAR3P49019 387 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 NR2C2P49116 596 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 DYNLT1P63172 113 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 OTUD4Q01804 1114 aaKnown RBP21.95■■□□□ 1.1
VPS28-212ENST00000530836 NNTQ13423 1086 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 PTK6Q13882 451 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 ZNF276Q8N554 614 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 C12orf76Q8N812 135 aaPredicted RBP21.95■■□□□ 1.1
VPS28-212ENST00000530836 CCDC89Q8N998 374 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 ADAM32Q8TC27 787 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 ACTL9Q8TC94 416 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 IFT81Q8WYA0 676 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 RNF34Q969K3 372 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 CSPG4P5Q96PW8 444 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 S1PR5Q9H228 398 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 SFXN1Q9H9B4 322 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 NMUR1Q9HB89 426 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 CYP4F11Q9HBI6 524 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 ZDHHC7Q9NXF8 308 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 GMIPQ9P107 970 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 ZNF148Q9UQR1 794 aa21.95■■□□□ 1.1
VPS28-212ENST00000530836 ZSCAN5CA6NGD5 496 aaPredicted RBP21.94■■□□□ 1.1
VPS28-212ENST00000530836 PRRG1O14668 218 aa21.94■■□□□ 1.1
VPS28-212ENST00000530836 MCF2LO15068 1137 aa21.94■■□□□ 1.1
VPS28-212ENST00000530836 SOAT2O75908 522 aa21.94■■□□□ 1.1
VPS28-212ENST00000530836 PAPLNO95428 1278 aa21.94■■□□□ 1.1
VPS28-212ENST00000530836 C8AP07357 584 aa21.94■■□□□ 1.1
VPS28-212ENST00000530836 CCR1P32246 355 aa21.94■■□□□ 1.1
VPS28-212ENST00000530836 TAF10Q12962 218 aa21.94■■□□□ 1.1
VPS28-212ENST00000530836 PPP2R5DQ14738 602 aa21.94■■□□□ 1.1
VPS28-212ENST00000530836 VEPH1Q14D04 833 aa21.94■■□□□ 1.1
VPS28-212ENST00000530836 BZW1Q7L1Q6 419 aaKnown RBP21.94■■□□□ 1.1
VPS28-212ENST00000530836 TADA2BQ86TJ2 420 aa21.94■■□□□ 1.1
VPS28-212ENST00000530836 PCDH19Q8TAB3 1148 aa21.94■■□□□ 1.1
VPS28-212ENST00000530836 TRIM51Q9BSJ1 452 aa21.94■■□□□ 1.1
VPS28-212ENST00000530836 CD207Q9UJ71 328 aa21.94■■□□□ 1.1
VPS28-212ENST00000530836 DNPEPQ9ULA0 475 aa21.94■■□□□ 1.1
VPS28-212ENST00000530836 SPDYE4A6NLX3 237 aa21.93■■□□□ 1.1
VPS28-212ENST00000530836 RFPL2O75678 378 aa21.93■■□□□ 1.1
VPS28-212ENST00000530836 ZDHHC11BP0C7U3 371 aa21.93■■□□□ 1.1
VPS28-212ENST00000530836 CARSP49589 748 aaKnown RBP21.93■■□□□ 1.1
VPS28-212ENST00000530836 MTA1Q13330 715 aa21.93■■□□□ 1.1
VPS28-212ENST00000530836 OASLQ15646 514 aaKnown RBP21.93■■□□□ 1.1
VPS28-212ENST00000530836 LEXMQ3ZCV2 418 aa21.93■■□□□ 1.1
VPS28-212ENST00000530836 GSTA5Q7RTV2 222 aa21.93■■□□□ 1.1
VPS28-212ENST00000530836 PQLC3Q8N755 202 aa21.93■■□□□ 1.1
VPS28-212ENST00000530836 PLD5Q8N7P1 536 aa21.93■■□□□ 1.1
VPS28-212ENST00000530836 GPR152Q8TDT2 470 aa21.93■■□□□ 1.1
VPS28-212ENST00000530836 AENQ8WTP8 325 aaKnown RBP21.93■■□□□ 1.1
VPS28-212ENST00000530836 HAPLN3Q96S86 360 aa21.93■■□□□ 1.1
VPS28-212ENST00000530836 TKTL2Q9H0I9 626 aa21.93■■□□□ 1.1
VPS28-212ENST00000530836 OSBPL2Q9H1P3 480 aa21.93■■□□□ 1.1
VPS28-212ENST00000530836 ARHGEF38Q9NXL2 777 aa21.93■■□□□ 1.1
VPS28-212ENST00000530836 CWC15Q9P013 229 aaKnown RBP21.93■■□□□ 1.1
VPS28-212ENST00000530836 BRWD1Q9NSI6 2320 aa21.93■■□□□ 1.1
VPS28-212ENST00000530836 CCDC195A0A1B0GUA6 201 aa21.92■■□□□ 1.1
VPS28-212ENST00000530836 ESYT3A0FGR9 886 aa21.92■■□□□ 1.1
VPS28-212ENST00000530836 NDC80O14777 642 aa21.92■■□□□ 1.1
VPS28-212ENST00000530836 DAPK3O43293 454 aa21.92■■□□□ 1.1
VPS28-212ENST00000530836 RARGP13631 454 aa21.92■■□□□ 1.1
VPS28-212ENST00000530836 HOXA9P31269 272 aa21.92■■□□□ 1.1
VPS28-212ENST00000530836 HTR7P34969 479 aa21.92■■□□□ 1.1
VPS28-212ENST00000530836 PPP3CCP48454 512 aa21.92■■□□□ 1.1
VPS28-212ENST00000530836 PLD1Q13393 1074 aa21.92■■□□□ 1.1
VPS28-212ENST00000530836 HLTFQ14527 1009 aaKnown RBP eCLIP21.92■■□□□ 1.1
VPS28-212ENST00000530836 NOMO1Q15155 1222 aa21.92■■□□□ 1.1
VPS28-212ENST00000530836 PPM1LQ5SGD2 360 aa21.92■■□□□ 1.1
VPS28-212ENST00000530836 ACBD5Q5T8D3 534 aaPredicted RBP21.92■■□□□ 1.1
VPS28-212ENST00000530836 SMRP1Q8NCR6 262 aa21.92■■□□□ 1.1
VPS28-212ENST00000530836 GIPC2Q8TF65 315 aa21.92■■□□□ 1.1
VPS28-212ENST00000530836 TRMT2BQ96GJ1 504 aaKnown RBP21.92■■□□□ 1.1
VPS28-212ENST00000530836 MYRFLQ96LU7 910 aa21.92■■□□□ 1.1
VPS28-212ENST00000530836 ADAM7Q9H2U9 754 aa21.92■■□□□ 1.1
VPS28-212ENST00000530836 MTPAPQ9NVV4 582 aaKnown RBP eCLIP21.92■■□□□ 1.11e-6■■□□□ 14.1
VPS28-212ENST00000530836 OSER1Q9NX31 292 aa21.92■■□□□ 1.1
VPS28-212ENST00000530836 NFU1Q9UMS0 254 aa21.92■■□□□ 1.1
VPS28-212ENST00000530836 TLR6Q9Y2C9 796 aa21.92■■□□□ 1.1
VPS28-212ENST00000530836 ZNF189O75820 626 aaPredicted RBP21.91■■□□□ 1.1
VPS28-212ENST00000530836 HNRNPA1P09651 372 aaKnown RBP eCLIP21.91■■□□□ 1.1
VPS28-212ENST00000530836 STIP1P31948 543 aaKnown RBP21.91■■□□□ 1.1
VPS28-212ENST00000530836 KPNA1P52294 538 aaPredicted RBP21.91■■□□□ 1.1
VPS28-212ENST00000530836 EIF3EP60228 445 aaKnown RBP21.91■■□□□ 1.1
VPS28-212ENST00000530836 TFF2Q03403 129 aa21.91■■□□□ 1.1
VPS28-212ENST00000530836 RARS2Q5T160 578 aaKnown RBP21.91■■□□□ 1.1
VPS28-212ENST00000530836 SNX30Q5VWJ9 437 aa21.91■■□□□ 1.1
VPS28-212ENST00000530836 TMC5Q6UXY8 1006 aa21.91■■□□□ 1.1
VPS28-212ENST00000530836 ALLCQ8N6M5 410 aa21.91■■□□□ 1.1
VPS28-212ENST00000530836 BBOF1Q8ND07 529 aa21.91■■□□□ 1.1
VPS28-212ENST00000530836 CAVIN3Q969G5 261 aa21.91■■□□□ 1.1
VPS28-212ENST00000530836 HAUS1Q96CS2 278 aa21.91■■□□□ 1.1
VPS28-212ENST00000530836 EPAS1Q99814 870 aa21.91■■□□□ 1.1
VPS28-212ENST00000530836 HINFPQ9BQA5 517 aa21.91■■□□□ 1.1
VPS28-212ENST00000530836 APOL5Q9BWW9 433 aa21.91■■□□□ 1.1
VPS28-212ENST00000530836 PRKD2Q9BZL6 878 aa21.91■■□□□ 1.1
VPS28-212ENST00000530836 THEGQ9P2T0 379 aa21.91■■□□□ 1.1
VPS28-212ENST00000530836 YIPF1Q9Y548 306 aa21.91■■□□□ 1.1
VPS28-212ENST00000530836 INSL5Q9Y5Q6 135 aa21.91■■□□□ 1.1
VPS28-212ENST00000530836 MYO16Q9Y6X6 1858 aa21.91■■□□□ 1.1
VPS28-212ENST00000530836 EEF2KO00418 725 aaKnown RBP21.91■■□□□ 1.1
VPS28-212ENST00000530836 MYBL2P10244 700 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms