RNA–Protein interactions for RNA: ENST00000477461.1

UBR3-209, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 4

Gene UBR3, Length 595 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-209ENST00000477461 PEX2P28328 305 aa4.79□□□□□ -1.64
UBR3-209ENST00000477461 HTR6P50406 440 aa4.79□□□□□ -1.64
UBR3-209ENST00000477461 EIF4A1P60842 406 aaKnown RBP4.79□□□□□ -1.64
UBR3-209ENST00000477461 MTX1Q13505 466 aa4.79□□□□□ -1.64
UBR3-209ENST00000477461 TWIST1Q15672 202 aa4.79□□□□□ -1.64
UBR3-209ENST00000477461 FAM110CQ1W6H9 321 aa4.79□□□□□ -1.64
UBR3-209ENST00000477461 MIDNQ504T8 468 aa4.79□□□□□ -1.64
UBR3-209ENST00000477461 PLAG1Q6DJT9 500 aa4.79□□□□□ -1.64
UBR3-209ENST00000477461 MEPCEQ7L2J0 689 aaKnown RBP4.79□□□□□ -1.64
UBR3-209ENST00000477461 P3H2Q8IVL5 708 aa4.79□□□□□ -1.64
UBR3-209ENST00000477461 YAF2Q8IY57 180 aa4.79□□□□□ -1.64
UBR3-209ENST00000477461 ARFGAP1Q8N6T3 406 aa4.79□□□□□ -1.64
UBR3-209ENST00000477461 PNPLA1Q8N8W4 532 aa4.79□□□□□ -1.64
UBR3-209ENST00000477461 SMCR8Q8TEV9 937 aaPredicted RBP4.79□□□□□ -1.64
UBR3-209ENST00000477461 ZFYVE19Q96K21 471 aa4.79□□□□□ -1.64
UBR3-209ENST00000477461 TM2D2Q9BX73 214 aa4.79□□□□□ -1.64
UBR3-209ENST00000477461 ADGRE3Q9BY15 652 aa4.79□□□□□ -1.64
UBR3-209ENST00000477461 ZNF287Q9HBT7 754 aa4.79□□□□□ -1.64
UBR3-209ENST00000477461 TRIM36Q9NQ86 728 aa4.79□□□□□ -1.64
UBR3-209ENST00000477461 ARL8BQ9NVJ2 186 aa4.79□□□□□ -1.64
UBR3-209ENST00000477461 GAR1Q9NY12 217 aaKnown RBP4.79□□□□□ -1.64
UBR3-209ENST00000477461 STEAP1Q9UHE8 339 aa4.79□□□□□ -1.64
UBR3-209ENST00000477461 FZD4Q9ULV1 537 aa4.79□□□□□ -1.64
UBR3-209ENST00000477461 MAFFQ9ULX9 164 aa4.79□□□□□ -1.64
UBR3-209ENST00000477461 HEMK1Q9Y5R4 338 aaPredicted RBP4.79□□□□□ -1.64
UBR3-209ENST00000477461 IFT172Q9UG01 1749 aa4.79□□□□□ -1.64
UBR3-209ENST00000477461 TMEM2Q9UHN6 1383 aa4.78□□□□□ -1.64
UBR3-209ENST00000477461 MYOM2P54296 1465 aa4.78□□□□□ -1.64
UBR3-209ENST00000477461 ANO9A1A5B4 782 aa4.78□□□□□ -1.64
UBR3-209ENST00000477461 B4DGG1 531 aa4.78□□□□□ -1.64
UBR3-209ENST00000477461 RRHO14718 337 aa4.78□□□□□ -1.64
UBR3-209ENST00000477461 INPPL1O15357 1258 aa4.78□□□□□ -1.64
UBR3-209ENST00000477461 GALNSP34059 522 aa4.78□□□□□ -1.64
UBR3-209ENST00000477461 THBS4P35443 961 aa4.78□□□□□ -1.64
UBR3-209ENST00000477461 NANOS2P60321 138 aaKnown RBP4.78□□□□□ -1.64
UBR3-209ENST00000477461 TXNL4AP83876 142 aaKnown RBP4.78□□□□□ -1.64
UBR3-209ENST00000477461 EARS2Q5JPH6 523 aaKnown RBP4.78□□□□□ -1.64
UBR3-209ENST00000477461 TMEM63BQ5T3F8 832 aa4.78□□□□□ -1.64
UBR3-209ENST00000477461 GRHL2Q6ISB3 625 aa4.78□□□□□ -1.64
UBR3-209ENST00000477461 ZNF549Q6P9A3 640 aa4.78□□□□□ -1.64
UBR3-209ENST00000477461 ZNF793Q6ZN11 406 aa4.78□□□□□ -1.64
UBR3-209ENST00000477461 DEF8Q6ZN54 512 aa4.78□□□□□ -1.64
UBR3-209ENST00000477461 FSTL5Q8N475 847 aaPredicted RBP4.78□□□□□ -1.64
UBR3-209ENST00000477461 PJA1Q8NG27 643 aa4.78□□□□□ -1.64
UBR3-209ENST00000477461 TRMT61AQ96FX7 289 aaKnown RBP4.78□□□□□ -1.64
UBR3-209ENST00000477461 HIC2Q96JB3 615 aa4.78□□□□□ -1.64
UBR3-209ENST00000477461 CAMK1GQ96NX5 476 aa4.78□□□□□ -1.64
UBR3-209ENST00000477461 KRTAP2-2Q9BYT5 123 aa4.78□□□□□ -1.64
UBR3-209ENST00000477461 NUAK2Q9H093 628 aa4.78□□□□□ -1.64
UBR3-209ENST00000477461 FAM234AQ9H0X4 552 aa4.78□□□□□ -1.64
UBR3-209ENST00000477461 DHX36Q9H2U1 1008 aaKnown RBP4.78□□□□□ -1.64
UBR3-209ENST00000477461 ARNT2Q9HBZ2 717 aa4.78□□□□□ -1.64
UBR3-209ENST00000477461 MLXIPLQ9NP71 852 aa4.78□□□□□ -1.64
UBR3-209ENST00000477461 DNAJB11Q9UBS4 358 aa4.78□□□□□ -1.64
UBR3-209ENST00000477461 POLR1AO95602 1720 aaPredicted RBP4.77□□□□□ -1.65
UBR3-209ENST00000477461 NEXMIFQ5QGS0 1516 aa4.77□□□□□ -1.65
UBR3-209ENST00000477461 AQP7P3A6NL99 342 aa4.77□□□□□ -1.65
UBR3-209ENST00000477461 C16orf96A6NNT2 1141 aa4.77□□□□□ -1.65
UBR3-209ENST00000477461 A8MVJ9 347 aa4.77□□□□□ -1.65
UBR3-209ENST00000477461 OAZ2O95190 189 aa4.77□□□□□ -1.65
UBR3-209ENST00000477461 KRT18P05783 430 aaKnown RBP4.77□□□□□ -1.65
UBR3-209ENST00000477461 TMEM225BP0DP42 221 aa4.77□□□□□ -1.65
UBR3-209ENST00000477461 THBS3P49746 956 aa4.77□□□□□ -1.65
UBR3-209ENST00000477461 CCDC15Q0P6D6 951 aa4.77□□□□□ -1.65
UBR3-209ENST00000477461 SAFBQ15424 915 aaKnown RBP eCLIP4.77□□□□□ -1.65
UBR3-209ENST00000477461 MANEALQ5VSG8 457 aa4.77□□□□□ -1.65
UBR3-209ENST00000477461 PPP4R4Q6NUP7 873 aa4.77□□□□□ -1.65
UBR3-209ENST00000477461 PHKBQ93100 1093 aa4.77□□□□□ -1.65
UBR3-209ENST00000477461 MARK4Q96L34 752 aa4.77□□□□□ -1.65
UBR3-209ENST00000477461 STRBPQ96SI9 672 aaKnown RBP4.77□□□□□ -1.65
UBR3-209ENST00000477461 TRMOQ9BU70 441 aa4.77□□□□□ -1.65
UBR3-209ENST00000477461 HIPK2Q9H2X6 1198 aa4.77□□□□□ -1.65
UBR3-209ENST00000477461 SAP30LQ9HAJ7 183 aa4.77□□□□□ -1.65
UBR3-209ENST00000477461 VPS45Q9NRW7 570 aa4.77□□□□□ -1.65
UBR3-209ENST00000477461 HPSEQ9Y251 543 aa4.77□□□□□ -1.65
UBR3-209ENST00000477461 ZFYVE9O95405 1425 aa4.77□□□□□ -1.65
UBR3-209ENST00000477461 SLIT1O75093 1534 aa4.77□□□□□ -1.65
UBR3-209ENST00000477461 ADGRF5Q8IZF2 1346 aa4.76□□□□□ -1.65
UBR3-209ENST00000477461 SCAF11Q99590 1463 aaKnown RBP4.76□□□□□ -1.65
UBR3-209ENST00000477461 ARHGAP23Q9P227 1491 aa4.76□□□□□ -1.65
UBR3-209ENST00000477461 LAMC1P11047 1609 aa4.76□□□□□ -1.65
UBR3-209ENST00000477461 CNOT3O75175 753 aaKnown RBP4.76□□□□□ -1.65
UBR3-209ENST00000477461 TULP3O75386 442 aa4.76□□□□□ -1.65
UBR3-209ENST00000477461 PLAUP00749 431 aa4.76□□□□□ -1.65
UBR3-209ENST00000477461 MYL1P05976 194 aa4.76□□□□□ -1.65
UBR3-209ENST00000477461 CD63P08962 238 aa4.76□□□□□ -1.65
UBR3-209ENST00000477461 CARSP49589 748 aaKnown RBP4.76□□□□□ -1.65
UBR3-209ENST00000477461 HSPA2P54652 639 aa4.76□□□□□ -1.65
UBR3-209ENST00000477461 HSF1Q00613 529 aa4.76□□□□□ -1.65
UBR3-209ENST00000477461 ST3GAL2Q16842 350 aa4.76□□□□□ -1.65
UBR3-209ENST00000477461 RRAGBQ5VZM2 374 aa4.76□□□□□ -1.65
UBR3-209ENST00000477461 C9orf47Q6ZRZ4 202 aa4.76□□□□□ -1.65
UBR3-209ENST00000477461 TFAP2DQ7Z6R9 452 aa4.76□□□□□ -1.65
UBR3-209ENST00000477461 PRAG1Q86YV5 1406 aa4.76□□□□□ -1.65
UBR3-209ENST00000477461 MMP21Q8N119 569 aa4.76□□□□□ -1.65
UBR3-209ENST00000477461 WIPF2Q8TF74 440 aaPredicted RBP4.76□□□□□ -1.65
UBR3-209ENST00000477461 SLC25A28Q96A46 364 aa4.76□□□□□ -1.65
UBR3-209ENST00000477461 UNKQ9C0B0 810 aaKnown RBP4.76□□□□□ -1.65
UBR3-209ENST00000477461 MLXIPQ9HAP2 919 aa4.76□□□□□ -1.65
UBR3-209ENST00000477461 TMEM45AQ9NWC5 275 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms