RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 CELSR3Q9NYQ7 3312 aa23.61■■□□□ 1.37
USP4-208ENST00000464168 ACACAQ13085 2346 aa23.61■■□□□ 1.37
USP4-208ENST00000464168 YJEFN3A6XGL0 299 aa23.6■■□□□ 1.37
USP4-208ENST00000464168 E7ENQ6 273 aa23.6■■□□□ 1.37
USP4-208ENST00000464168 CSNK1EP49674 416 aaKnown RBP23.6■■□□□ 1.37
USP4-208ENST00000464168 ADIGQ0VDE8 80 aa23.6■■□□□ 1.37
USP4-208ENST00000464168 BST2Q10589 180 aaKnown RBP23.6■■□□□ 1.37
USP4-208ENST00000464168 CUL2Q13617 745 aa23.6■■□□□ 1.37
USP4-208ENST00000464168 COL9A2Q14055 689 aaPredicted RBP23.6■■□□□ 1.37
USP4-208ENST00000464168 FNDC3BQ53EP0 1204 aaKnown RBP23.6■■□□□ 1.37
USP4-208ENST00000464168 SGO2Q562F6 1265 aa23.6■■□□□ 1.37
USP4-208ENST00000464168 DBX2Q6ZNG2 339 aa23.6■■□□□ 1.37
USP4-208ENST00000464168 KIAA0907Q7Z7F0 614 aaPredicted RBP23.6■■□□□ 1.37
USP4-208ENST00000464168 ADIPOR2Q86V24 386 aa23.6■■□□□ 1.37
USP4-208ENST00000464168 UBA3Q8TBC4 463 aa23.6■■□□□ 1.37
USP4-208ENST00000464168 RNF139Q8WU17 664 aa23.6■■□□□ 1.37
USP4-208ENST00000464168 TMA16Q96EY4 203 aaKnown RBP23.6■■□□□ 1.37
USP4-208ENST00000464168 IPO9Q96P70 1041 aaKnown RBP23.6■■□□□ 1.37
USP4-208ENST00000464168 C6orf106Q9H6K1 298 aaPredicted RBP23.6■■□□□ 1.37
USP4-208ENST00000464168 PLA2G4CQ9UP65 541 aa23.6■■□□□ 1.37
USP4-208ENST00000464168 A0A1B0GVT2 93 aa23.59■■□□□ 1.37
USP4-208ENST00000464168 ACSL1P33121 698 aa23.59■■□□□ 1.37
USP4-208ENST00000464168 ZNF445P59923 1031 aa23.59■■□□□ 1.37
USP4-208ENST00000464168 PTPRNQ16849 979 aa23.59■■□□□ 1.37
USP4-208ENST00000464168 CHST9Q7L1S5 443 aa23.59■■□□□ 1.37
USP4-208ENST00000464168 ZNF366Q8N895 744 aa23.59■■□□□ 1.37
USP4-208ENST00000464168 DDX51Q8N8A6 666 aaKnown RBP eCLIP23.59■■□□□ 1.37
USP4-208ENST00000464168 WFIKKN2Q8TEU8 576 aa23.59■■□□□ 1.37
USP4-208ENST00000464168 LHX5Q9H2C1 402 aa23.59■■□□□ 1.37
USP4-208ENST00000464168 ABCB8Q9NUT2 735 aa23.59■■□□□ 1.37
USP4-208ENST00000464168 KIAA1522Q9P206 1035 aaPredicted RBP23.59■■□□□ 1.37
USP4-208ENST00000464168 HESX1Q9UBX0 185 aa23.59■■□□□ 1.37
USP4-208ENST00000464168 MSI1O43347 362 aaKnown RBP23.58■■□□□ 1.37
USP4-208ENST00000464168 LATS1O95835 1130 aa23.58■■□□□ 1.37
USP4-208ENST00000464168 CD19P15391 556 aa23.58■■□□□ 1.37
USP4-208ENST00000464168 SGSHP51688 502 aa23.58■■□□□ 1.37
USP4-208ENST00000464168 TCERG1LQ5VWI1 586 aa23.58■■□□□ 1.37
USP4-208ENST00000464168 ZC3H3Q8IXZ2 948 aaKnown RBP23.58■■□□□ 1.37
USP4-208ENST00000464168 BAHD1Q8TBE0 780 aaPredicted RBP23.58■■□□□ 1.37
USP4-208ENST00000464168 KCTD13Q8WZ19 329 aa23.58■■□□□ 1.37
USP4-208ENST00000464168 ABCC13Q9NSE7 274 aa23.58■■□□□ 1.37
USP4-208ENST00000464168 ZBTB32Q9Y2Y4 487 aaPredicted RBP23.58■■□□□ 1.37
USP4-208ENST00000464168 PCDHGB2Q9Y5G2 931 aa23.58■■□□□ 1.37
USP4-208ENST00000464168 O00370 1275 aa23.57■■□□□ 1.36
USP4-208ENST00000464168 GABBR2O75899 941 aa23.57■■□□□ 1.36
USP4-208ENST00000464168 VDRP11473 427 aa23.57■■□□□ 1.36
USP4-208ENST00000464168 PRCPP42785 496 aa23.57■■□□□ 1.36
USP4-208ENST00000464168 AFF3P51826 1226 aaKnown RBP23.57■■□□□ 1.36
USP4-208ENST00000464168 KIF19Q2TAC6 998 aa23.57■■□□□ 1.36
USP4-208ENST00000464168 PKDCCQ504Y2 493 aa23.57■■□□□ 1.36
USP4-208ENST00000464168 DCAF17Q5H9S7 520 aaPredicted RBP23.57■■□□□ 1.36
USP4-208ENST00000464168 SIX6OS1Q8N1H7 587 aa23.57■■□□□ 1.36
USP4-208ENST00000464168 SCML4Q8N228 414 aa23.57■■□□□ 1.36
USP4-208ENST00000464168 UBR7Q8N806 425 aa23.57■■□□□ 1.36
USP4-208ENST00000464168 SNX19Q92543 992 aa23.57■■□□□ 1.36
USP4-208ENST00000464168 SCAND2PQ9GZW5 306 aaPredicted RBP23.57■■□□□ 1.36
USP4-208ENST00000464168 PRSS16Q9NQE7 514 aa23.57■■□□□ 1.36
USP4-208ENST00000464168 CNGB3Q9NQW8 809 aa23.57■■□□□ 1.36
USP4-208ENST00000464168 TOR4AQ9NXH8 423 aa23.57■■□□□ 1.36
USP4-208ENST00000464168 GGA2Q9UJY4 613 aa23.57■■□□□ 1.36
USP4-208ENST00000464168 IGSF10Q6WRI0 2623 aa23.57■■□□□ 1.36
USP4-208ENST00000464168 ATXN1LP0C7T5 689 aaKnown RBP23.56■■□□□ 1.36
USP4-208ENST00000464168 PABPC1P11940 636 aaKnown RBP23.56■■□□□ 1.36
USP4-208ENST00000464168 DAOAP59103 153 aa23.56■■□□□ 1.36
USP4-208ENST00000464168 RPS14P62263 151 aaKnown RBP23.56■■□□□ 1.36
USP4-208ENST00000464168 MBLAC2Q68D91 279 aa23.56■■□□□ 1.36
USP4-208ENST00000464168 AHI1Q8N157 1196 aa23.56■■□□□ 1.36
USP4-208ENST00000464168 WFDC5Q8TCV5 224 aa23.56■■□□□ 1.36
USP4-208ENST00000464168 RHBDD1Q8TEB9 315 aa23.56■■□□□ 1.36
USP4-208ENST00000464168 OSGEPQ9NPF4 335 aa23.56■■□□□ 1.36
USP4-208ENST00000464168 KIAA1257Q9ULG3 409 aa23.56■■□□□ 1.36
USP4-208ENST00000464168 GPSM3Q9Y4H4 160 aa23.56■■□□□ 1.36
USP4-208ENST00000464168 PLXNB3Q9ULL4 1909 aa23.55■■□□□ 1.36
USP4-208ENST00000464168 SLC16A3O15427 465 aaKnown RBP23.55■■□□□ 1.36
USP4-208ENST00000464168 FLRT2O43155 660 aa23.55■■□□□ 1.36
USP4-208ENST00000464168 DKK1O94907 266 aa23.55■■□□□ 1.36
USP4-208ENST00000464168 SEMA4FO95754 770 aa23.55■■□□□ 1.36
USP4-208ENST00000464168 DLDP09622 509 aaKnown RBP23.55■■□□□ 1.36
USP4-208ENST00000464168 SETSIPP0DME0 302 aa23.55■■□□□ 1.36
USP4-208ENST00000464168 LCP1P13796 627 aa23.55■■□□□ 1.36
USP4-208ENST00000464168 YWHAEP62258 255 aaKnown RBP23.55■■□□□ 1.36
USP4-208ENST00000464168 ZBTB16Q05516 673 aa23.55■■□□□ 1.36
USP4-208ENST00000464168 PNOCQ13519 176 aa23.55■■□□□ 1.36
USP4-208ENST00000464168 ANKRD40Q6AI12 368 aa23.55■■□□□ 1.36
USP4-208ENST00000464168 MSANTD2Q6P1R3 559 aa23.55■■□□□ 1.36
USP4-208ENST00000464168 RFWD3Q6PCD5 774 aa23.55■■□□□ 1.36
USP4-208ENST00000464168 LCLAT1Q6UWP7 414 aa23.55■■□□□ 1.36
USP4-208ENST00000464168 TFAP2BQ92481 460 aa23.55■■□□□ 1.36
USP4-208ENST00000464168 CDC6Q99741 560 aa23.55■■□□□ 1.36
USP4-208ENST00000464168 BTBD1Q9H0C5 482 aa23.55■■□□□ 1.36
USP4-208ENST00000464168 CCDC86Q9H6F5 360 aaKnown RBP23.55■■□□□ 1.36
USP4-208ENST00000464168 FBRSQ9HAH7 460 aa23.55■■□□□ 1.36
USP4-208ENST00000464168 TM9SF3Q9HD45 589 aa23.55■■□□□ 1.36
USP4-208ENST00000464168 BTBD3Q9Y2F9 522 aa23.55■■□□□ 1.36
USP4-208ENST00000464168 SNX11Q9Y5W9 270 aa23.55■■□□□ 1.36
USP4-208ENST00000464168 GOLGA6L7A0A1B0GV03 622 aa23.54■■□□□ 1.36
USP4-208ENST00000464168 IGLV3-27P01718 113 aa23.54■■□□□ 1.36
USP4-208ENST00000464168 ATP5BP06576 529 aaKnown RBP23.54■■□□□ 1.36
USP4-208ENST00000464168 CD70P32970 193 aa23.54■■□□□ 1.36
USP4-208ENST00000464168 PMS1P54277 932 aaKnown RBP23.54■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms