RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 SCML1Q9UN30 329 aa7.38□□□□□ -1.23
VPS41-208ENST00000448833 CYP8B1Q9UNU6 501 aa7.38□□□□□ -1.23
VPS41-208ENST00000448833 PCDHB9Q9Y5E1 797 aa7.38□□□□□ -1.23
VPS41-208ENST00000448833 PCDHB4Q9Y5E5 795 aa7.38□□□□□ -1.23
VPS41-208ENST00000448833 ANTXRLA6NF34 631 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 YJEFN3A6XGL0 299 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 WASH3PC4AMC7 463 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 E7ENQ6 273 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 O00370 1275 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 RNASEH1O60930 286 aaKnown RBP7.37□□□□□ -1.23
VPS41-208ENST00000448833 MOCS3O95396 460 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 EPHX1P07099 455 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 ZNF883P0CG24 379 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 NCAM1P13591 858 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 LCP1P13796 627 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 POLR2EP19388 210 aaKnown RBP7.37□□□□□ -1.23
VPS41-208ENST00000448833 TPMTP51580 245 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 DAOAP59103 153 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 ST8SIA6P61647 398 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 FOXC1Q12948 553 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 NNTQ13423 1086 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 CAMK2BQ13554 666 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 DSG2Q14126 1118 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 ZNF234Q14588 700 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 SUZ12Q15022 739 aaKnown RBP7.37□□□□□ -1.23
VPS41-208ENST00000448833 GEN1Q17RS7 908 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 ZNF423Q2M1K9 1284 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 FNDC3BQ53EP0 1204 aaKnown RBP7.37□□□□□ -1.23
VPS41-208ENST00000448833 MSANTD2Q6P1R3 559 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 BEND5Q7L4P6 421 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 MINDY1Q8N5J2 469 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 KDM1BQ8NB78 822 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 EHBP1Q8NDI1 1231 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 OR2T3Q8NH03 318 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 UBA3Q8TBC4 463 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 STK32AQ8WU08 396 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 SKA1Q96BD8 255 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 TOE1Q96GM8 510 aaKnown RBP7.37□□□□□ -1.23
VPS41-208ENST00000448833 SERPINB11Q96P15 392 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 MED15Q96RN5 788 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 WSB2Q9NYS7 404 aaPredicted RBP7.37□□□□□ -1.23
VPS41-208ENST00000448833 SLC12A6Q9UHW9 1150 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 HCN2Q9UL51 889 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 TPX2Q9ULW0 747 aaKnown RBP7.37□□□□□ -1.23
VPS41-208ENST00000448833 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.37□□□□□ -1.23
VPS41-208ENST00000448833 NCKAP1Q9Y2A7 1128 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 TLR6Q9Y2C9 796 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 NEUROG3Q9Y4Z2 214 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.37□□□□□ -1.23
VPS41-208ENST00000448833 RAD54BQ9Y620 910 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 PCDH15Q96QU1 1955 aa7.37□□□□□ -1.23
VPS41-208ENST00000448833 EPG5Q9HCE0 2579 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 CHD8Q9HCK8 2581 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 MAP1BP46821 2468 aaKnown RBP7.36□□□□□ -1.23
VPS41-208ENST00000448833 C2orf72A6NCS6 295 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 METTL12A8MUP2 240 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 M0QYV0 167 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 CAPN9O14815 690 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 BCAT2O15382 392 aaPredicted RBP7.36□□□□□ -1.23
VPS41-208ENST00000448833 DFNA5O60443 496 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 CER1O95813 267 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 AFPP02771 609 aaKnown RBP7.36□□□□□ -1.23
VPS41-208ENST00000448833 LTFP02788 710 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 DNTTP04053 509 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 ASLP04424 464 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 DLDP09622 509 aaKnown RBP7.36□□□□□ -1.23
VPS41-208ENST00000448833 SLC2A3P11169 496 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 HOXD9P28356 352 aaPredicted RBP7.36□□□□□ -1.23
VPS41-208ENST00000448833 NNMTP40261 264 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 IL12RB1P42701 662 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 AFF3P51826 1226 aaKnown RBP7.36□□□□□ -1.23
VPS41-208ENST00000448833 OXCT1P55809 520 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 MARSP56192 900 aaKnown RBP7.36□□□□□ -1.23
VPS41-208ENST00000448833 TBX4P57082 545 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 KCNH2Q12809 1159 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 LRMPQ12912 555 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 CAMK2GQ13555 558 aaPredicted RBP7.36□□□□□ -1.23
VPS41-208ENST00000448833 SLC12A1Q13621 1099 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 TEAD4Q15561 434 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 TTC31Q49AM3 519 aaPredicted RBP7.36□□□□□ -1.23
VPS41-208ENST00000448833 PKDCCQ504Y2 493 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 LRSAM1Q6UWE0 723 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 UNQ6494/PRO21346Q6UXR6 183 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 KIAA0907Q7Z7F0 614 aaPredicted RBP7.36□□□□□ -1.23
VPS41-208ENST00000448833 PIP4P1Q86T03 277 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 SLC41A1Q8IVJ1 513 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 DEFB119Q8N690 84 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 DDX51Q8N8A6 666 aaKnown RBP eCLIP7.36□□□□□ -1.23
VPS41-208ENST00000448833 HJURPQ8NCD3 748 aaPredicted RBP7.36□□□□□ -1.23
VPS41-208ENST00000448833 DEFB124Q8NES8 71 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 FIBINQ8TAL6 211 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 EDEM1Q92611 657 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 GPR174Q9BXC1 333 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 ADAM33Q9BZ11 813 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 MKRN2Q9H000 416 aaKnown RBP7.36□□□□□ -1.23
VPS41-208ENST00000448833 TMEM245Q9H330 911 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 OSGEPQ9NPF4 335 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 SFMBT1Q9UHJ3 866 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 GGA2Q9UJY4 613 aa7.36□□□□□ -1.23
VPS41-208ENST00000448833 APOBEC2Q9Y235 224 aaKnown RBP7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms